BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBS7b05.xg.2.1
(526 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cD... 50 2e-004
gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula c... 50 2e-004
gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Med... 50 2e-004
gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula c... 50 2e-004
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 50 2e-004
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 50 2e-004
gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago trunca... 48 7e-004
gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago tr... 48 7e-004
gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Med... 48 7e-004
gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula c... 48 7e-004
gb|AC150446.8| Medicago truncatula clone mth2-101n14, compl... 48 7e-004
gb|AC140546.11| Medicago truncatula clone mth2-35l19, compl... 48 7e-004
gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cD... 42 0.046
gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating ... 42 0.046
gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula... 40 0.18
gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula ... 40 0.18
gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula ... 40 0.18
>gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cDNA clone pKV3-15B20, mRNA
sequence
Length = 538
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Plus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 425 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 484
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 485 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 537
>gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula cDNA clone pDSIL-7K4, mRNA
sequence
Length = 511
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 200 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 141
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 140 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 88
>gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Medicago truncatula cDNA clone
NF094A06LF 5', mRNA sequence
Length = 639
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 187 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 128
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 127 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 75
>gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula cDNA clone MTYBC76, mRNA
sequence
Length = 795
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 755 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 696
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 695 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 643
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 93731 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 93672
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 93671 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 93619
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 50.1 bits (25), Expect = 2e-004
Identities = 91/113 (80%)
Strand = Plus / Minus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || || ||||| |||||||| |||| |
Sbjct: 129709 atggttggcgttcggttctggcgtcccataagacctttaaggaaggggtagagatggatg 129650
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 129649 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 129597
>gb|AW329632.2|AW329632 N200892e rootphos(-) Medicago truncatula cDNA clone MHRP-22D5, mRNA
sequence
Length = 495
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 367 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 308
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 307 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 248
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 247 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 192
>gb|BF634847.1|BF634847 NF075E01DT1F1005 Drought Medicago truncatula cDNA clone NF075E01DT
5', mRNA sequence
Length = 680
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 297 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 238
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 237 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 178
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 177 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 122
>gb|AW692037.2|AW692037 NF046H05ST1F1000 Developing stem Medicago truncatula cDNA clone
NF046H05ST 5', mRNA sequence
Length = 592
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 475 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 416
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 415 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 356
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 355 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 300
>gb|CA989884.1|CA989884 EST643392 GESD Medicago truncatula cDNA clone GESD-21H19, mRNA
sequence
Length = 842
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 569 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 510
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 509 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 450
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 449 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 394
>gb|AC150446.8| Medicago truncatula clone mth2-101n14, complete sequence
Length = 109162
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 107149 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 107090
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 107089 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 107030
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 107029 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 106974
>gb|AC140546.11| Medicago truncatula clone mth2-35l19, complete sequence
Length = 106963
Score = 48.1 bits (24), Expect = 7e-004
Identities = 138/176 (78%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 31362 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 31303
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 31302 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 31243
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 31242 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 31187
>gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cDNA clone pKV3-13H14, mRNA
sequence
Length = 551
Score = 42.1 bits (21), Expect = 0.046
Identities = 90/113 (79%)
Strand = Plus / Plus
Query: 356 atggtgggcgtccggttctggcgccccatgagccccttgaggaacgggtagaggtggacg 415
||||| ||||| ||||||||||| ||||| || || | ||||| |||||||| |||| |
Sbjct: 342 atggttggcgttcggttctggcgtcccataagaccttcaaggaaggggtagagatggatg 401
Query: 416 atgacccagaaggcgaagaagagcttgccgaagagcgggccccacgactggta 468
|| ||||| || || ||||| || || || ||||| || ||||| || |||||
Sbjct: 402 atcacccaaaatgcaaagaaaagtttaccaaagagtggtccccatgattggta 454
>gb|CX542093.1|CX542093 s13dNF85A12GS097_467494 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 617
Score = 42.1 bits (21), Expect = 0.046
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 553 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 494
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || | ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 493 cgacccatcaaacctntaaggaatggatatagatggacaatcacccagaaggaaaagaag 434
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 433 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 378
>gb|AL365795.1|AL365795 MtBA02D11R2 MtBA Medicago truncatula cDNA clone MtBA02D11 T7, mRNA
sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.18
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 229 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 170
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 169 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 110
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || | ||| |||||||| |||||
Sbjct: 109 agttttccaaatagaggtccccatgattggtaaccatagtttatggcgtctgagat 54
>gb|BI311476.1|BI311476 EST5313226 GESD Medicago truncatula cDNA clone pGESD13A7 5' end,
mRNA sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.18
Identities = 138/176 (78%), Gaps = 1/176 (0%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 778 gagaaaatggaagccaacaacactgaccatatcacaacaatggtggg-gtgcggttttgc 720
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 719 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 660
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || || ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 659 agttttccaaatagaggtccccatgattggtaaccattgtttatggcgtctgagat 604
>gb|BI312324.1|BI312324 EST5314074 GESD Medicago truncatula cDNA clone pGESD17P11 5' end,
mRNA sequence
Length = 711
Score = 40.1 bits (20), Expect = 0.18
Identities = 137/176 (77%)
Strand = Plus / Minus
Query: 317 gagaagatggaggccagcagcacggaccagatgacgacaatggtgggcgtccggttctgg 376
||||| ||||| |||| || ||| ||||| || || ||||||||||| || ||||| ||
Sbjct: 634 gagaaaatggaagccaacaacactgaccatatcacaacaatggtgggggtgcggttttgc 575
Query: 377 cgccccatgagccccttgaggaacgggtagaggtggacgatgacccagaaggcgaagaag 436
|| ||||| | || || ||||| || || || ||||| || |||||||||| ||||||
Sbjct: 574 cgacccatcaaacctttaaggaatggatatagatggacaatcacccagaaggaaaagaag 515
Query: 437 agcttgccgaagagcgggccccacgactggtacccgttgttgatggcgtcggagat 492
|| || || || || | ||||| || ||||| || ||||| |||||||| |||||
Sbjct: 514 agttttccaaatagagatccccatgattggtaaccattgtttatggcgtctgagat 459
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 125,229
Number of Sequences: 392609
Number of extensions: 125229
Number of successful extensions: 8603
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 8581
Number of HSP's gapped (non-prelim): 25
length of query: 526
length of database: 441,732,993
effective HSP length: 19
effective length of query: 507
effective length of database: 434,273,422
effective search space: 220176624954
effective search space used: 220176624954
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)