BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBL6b07.xg.2.1
(644 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AZ773488.1|AZ773488 T221272b Ser/Thr kinase-like sequenc... 46 0.004
gb|CX517064.1|CX517064 s13dNF12B02VI025_398599 Virus-Infect... 46 0.004
gb|CX522477.1|CX522477 s13dNF86C12VI088_470758 Virus-Infect... 46 0.004
gb|AZ773492.1|AZ773492 T221276b Ser/Thr kinase-like sequenc... 44 0.014
emb|CR485048.1| mth2-152J14FM1 BAC end, cultivar Jemalong A... 44 0.014
emb|CR968565.1| mth4-27H2FM1 BAC end, cultivar Jemalong A17... 44 0.014
gb|AW329110.2|AW329110 N200317e rootphos(-) Medicago trunca... 44 0.014
gb|CA919931.1|CA919931 EST637649 MTUS Medicago truncatula c... 44 0.014
gb|CX539497.1|CX539497 s13dNF61F03GS027_462254 Germinating ... 44 0.014
emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1... 42 0.057
>gb|AZ773488.1|AZ773488 T221272b Ser/Thr kinase-like sequences from Medicago truncatula
Medicago truncatula genomic clone K-B37, DNA sequence
Length = 540
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 87 agatcatacaccgtgacgtgaagaccaacaacata 121
|||| ||||||||||||||||||| || |||||||
Sbjct: 329 agataatacaccgtgacgtgaagagcaccaacata 363
>gb|CX517064.1|CX517064 s13dNF12B02VI025_398599 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 515
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 87 agatcatacaccgtgacgtgaagaccaacaacata 121
|||| ||||||||||||||||||| || |||||||
Sbjct: 457 agataatacaccgtgacgtgaagagcaccaacata 491
>gb|CX522477.1|CX522477 s13dNF86C12VI088_470758 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 605
Score = 46.1 bits (23), Expect = 0.004
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 87 agatcatacaccgtgacgtgaagaccaacaacata 121
|||| ||||||||||||||||||| || |||||||
Sbjct: 418 agataatacaccgtgacgtgaagagcaccaacata 452
>gb|AZ773492.1|AZ773492 T221276b Ser/Thr kinase-like sequences from Medicago truncatula
Medicago truncatula genomic clone K-B65, DNA sequence
Length = 540
Score = 44.1 bits (22), Expect = 0.014
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 89 atcatacaccgtgacgtgaaga 110
||||||||||||||||||||||
Sbjct: 331 atcatacaccgtgacgtgaaga 352
>emb|CR485048.1| mth2-152J14FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 599
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 45 accgaaaagagcgacgtatacagcttcggagtggtgct 82
>emb|CR968565.1| mth4-27H2FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 604
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 45 accgaaaagagcgacgtatacagcttcggagtggtgct 82
>gb|AW329110.2|AW329110 N200317e rootphos(-) Medicago truncatula cDNA clone MHRP-16D5, mRNA
sequence
Length = 591
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 414 accgaaaagagcgacgtatacagcttcggagtggtgct 451
>gb|CA919931.1|CA919931 EST637649 MTUS Medicago truncatula cDNA clone MTUS-20E6, mRNA
sequence
Length = 743
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 502 accgaaaagagcgacgtatacagcttcggagtggtgct 465
>gb|CX539497.1|CX539497 s13dNF61F03GS027_462254 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 521
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 263 accgagaagagcgacgtgtacagcttcggcgtcgtgct 300
||||| ||||||||||| ||||||||||| || |||||
Sbjct: 405 accgaaaagagcgacgtatacagcttcggagtggtgct 442
>emb|CT573216.1| Medicago truncatula chromosome 5 clone mte1-79f1, COMPLETE SEQUENCE
Length = 117869
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 275 gacgtgtacagcttcggcgtc 295
|||||||||||||||||||||
Sbjct: 24148 gacgtgtacagcttcggcgtc 24128
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 50,868
Number of Sequences: 392609
Number of extensions: 50868
Number of successful extensions: 3622
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3611
Number of HSP's gapped (non-prelim): 11
length of query: 644
length of database: 441,732,993
effective HSP length: 19
effective length of query: 625
effective length of database: 434,273,422
effective search space: 271420888750
effective search space used: 271420888750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)