BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QBD3a09.xg.3.1
(1105 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC152158.10| Medicago truncatula clone mth2-139g10, comp... 58 2e-006
gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-... 58 2e-006
gb|AC161033.18| Medicago truncatula clone mth2-57g13, compl... 58 2e-006
gb|AC124968.36| Medicago truncatula clone mth2-15e21, compl... 40 0.39
gb|AC174304.2| Medicago truncatula clone mth2-108f8, WORKIN... 40 0.39
>gb|AC152158.10| Medicago truncatula clone mth2-139g10, complete sequence
Length = 140874
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 653 caatcaatcattttcatgagaagctttttaaactgaaggacatgatgaa 701
|||| ||||||||||||||||||||| | ||||| || |||||||||||
Sbjct: 122884 caattaatcattttcatgagaagcttctcaaacttaaagacatgatgaa 122932
>gb|AC158375.1| Medicago truncatula chromosome 2 clone mth2-57g13, *** SEQUENCING IN
PROGRESS ***, 21 unordered pieces
Length = 127685
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Minus
Query: 653 caatcaatcattttcatgagaagctttttaaactgaaggacatgatgaa 701
|||| ||||||||||||||||||||| | ||||| || |||||||||||
Sbjct: 2197 caattaatcattttcatgagaagcttctcaaacttaaagacatgatgaa 2149
>gb|AC161033.18| Medicago truncatula clone mth2-57g13, complete sequence
Length = 109039
Score = 58.0 bits (29), Expect = 2e-006
Identities = 44/49 (89%)
Strand = Plus / Plus
Query: 653 caatcaatcattttcatgagaagctttttaaactgaaggacatgatgaa 701
|||| ||||||||||||||||||||| | ||||| || |||||||||||
Sbjct: 18068 caattaatcattttcatgagaagcttctcaaacttaaagacatgatgaa 18116
>gb|AC124968.36| Medicago truncatula clone mth2-15e21, complete sequence
Length = 106968
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 739 aggttcatggaggaatttgt 758
||||||||||||||||||||
Sbjct: 19063 aggttcatggaggaatttgt 19082
>gb|AC174304.2| Medicago truncatula clone mth2-108f8, WORKING DRAFT SEQUENCE
Length = 22550
Score = 40.1 bits (20), Expect = 0.39
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 739 aggttcatggaggaatttgt 758
||||||||||||||||||||
Sbjct: 3490 aggttcatggaggaatttgt 3471
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 301,147
Number of Sequences: 392609
Number of extensions: 301147
Number of successful extensions: 24008
Number of sequences better than 0.5: 5
Number of HSP's better than 0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 23980
Number of HSP's gapped (non-prelim): 28
length of query: 1105
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1085
effective length of database: 433,880,813
effective search space: 470760682105
effective search space used: 470760682105
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)