BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ3f05.yg.3.1
(1626 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX525280.1|CX525280 s13dNF16E03AT023_479194 Aphid-Infect... 52 2e-004
gb|BI271835.1|BI271835 NF012F12FL1F1102 Developing flower M... 50 6e-004
gb|CG924126.1|CG924126 MBEAX82TR mth2 Medicago truncatula g... 48 0.002
gb|AC155894.4| Medicago truncatula chromosome 7 clone mth2-... 48 0.002
gb|AW693794.1|AW693794 NF069B09ST1F1076 Developing stem Med... 46 0.009
gb|AL385549.1|AL385549 MtBC29B12F1 MtBC Medicago truncatula... 46 0.009
gb|BI308745.1|BI308745 EST530155 GPOD Medicago truncatula c... 46 0.009
gb|BQ148310.1|BQ148310 NF067A02FL1F1017 Developing flower M... 46 0.009
emb|CR319147.1| mte1-44J11FM1 BAC end, cultivar Jemalong A1... 44 0.037
gb|BQ140132.1|BQ140132 NF029C05PH1F1037 Phoma-infected Medi... 44 0.037
>gb|CX525280.1|CX525280 s13dNF16E03AT023_479194 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 538
Score = 52.0 bits (26), Expect = 2e-004
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 489 aacaaaacattctacactgattccagtggacgtgatttcatcaaaaggat 538
||||| ||||||||||| ||||| | ||||||||| ||||| ||||||||
Sbjct: 471 aacaagacattctacacagattctaatggacgtgacttcattaaaaggat 520
>gb|BI271835.1|BI271835 NF012F12FL1F1102 Developing flower Medicago truncatula cDNA clone
NF012F12FL 5', mRNA sequence
Length = 608
Score = 50.1 bits (25), Expect = 6e-004
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 231 ctcaggcttctggagcatacatattccgccctaatgg 267
||||||| ||||||||||| || ||||||||||||||
Sbjct: 473 ctcaggcgtctggagcatatattttccgccctaatgg 509
>gb|CG924126.1|CG924126 MBEAX82TR mth2 Medicago truncatula genomic clone 16N20, DNA
sequence
Length = 855
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 489 aacaaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 451 aacaagacattctacacagattctaatggacgtgacttcattaaaagg 498
>gb|AC155894.4| Medicago truncatula chromosome 7 clone mth2-67b7, *** SEQUENCING IN
PROGRESS ***, 3 ordered pieces
Length = 125354
Score = 48.1 bits (24), Expect = 0.002
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 489 aacaaaacattctacactgattccagtggacgtgatttcatcaaaagg 536
||||| ||||||||||| ||||| | ||||||||| ||||| ||||||
Sbjct: 75779 aacaagacattctacacagattctaatggacgtgacttcattaaaagg 75732
Score = 42.1 bits (21), Expect = 0.15
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 852 tggcgtcggacatttggccaggaaatata 880
||||| || ||||||||||||||||||||
Sbjct: 61919 tggcgccgtacatttggccaggaaatata 61891
>gb|AW693794.1|AW693794 NF069B09ST1F1076 Developing stem Medicago truncatula cDNA clone
NF069B09ST 5', mRNA sequence
Length = 648
Score = 46.1 bits (23), Expect = 0.009
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatc 530
||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 387 aaaaccttctatactgattctaatggacgtgatttcatc 425
Score = 44.1 bits (22), Expect = 0.037
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 234 aggcttctggagcatacatattccgccctaatgg 267
|||| ||||||||||| || ||||||||||||||
Sbjct: 127 aggcgtctggagcatatattttccgccctaatgg 160
>gb|AL385549.1|AL385549 MtBC29B12F1 MtBC Medicago truncatula cDNA clone MtBC29B12 T3, mRNA
sequence
Length = 424
Score = 46.1 bits (23), Expect = 0.009
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatc 530
||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 50 aaaaccttctatactgattctaatggacgtgatttcatc 88
>gb|BI308745.1|BI308745 EST530155 GPOD Medicago truncatula cDNA clone pGPOD-8J1 5' end,
mRNA sequence
Length = 558
Score = 46.1 bits (23), Expect = 0.009
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 567 gaagtgcaccagcctattgctggaaactattatcctgttaatcttgg 613
|||||||||||||| |||||||||| ||||| || ||||||||||
Sbjct: 295 gaagtgcaccagcccgttgctggaaattattacccaattaatcttgg 341
>gb|BQ148310.1|BQ148310 NF067A02FL1F1017 Developing flower Medicago truncatula cDNA clone
NF067A02FL 5', mRNA sequence
Length = 487
Score = 46.1 bits (23), Expect = 0.009
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 492 aaaacattctacactgattccagtggacgtgatttcatc 530
||||| ||||| |||||||| | ||||||||||||||||
Sbjct: 244 aaaaccttctatactgattctaatggacgtgatttcatc 282
>emb|CR319147.1| mte1-44J11FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 702
Score = 44.1 bits (22), Expect = 0.037
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 234 aggcttctggagcatacatattccgccctaatgg 267
|||| ||||||||||| || ||||||||||||||
Sbjct: 125 aggcgtctggagcatatattttccgccctaatgg 158
>gb|BQ140132.1|BQ140132 NF029C05PH1F1037 Phoma-infected Medicago truncatula cDNA clone
NF029C05PH 5', mRNA sequence
Length = 235
Score = 44.1 bits (22), Expect = 0.037
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 234 aggcttctggagcatacatattccgccctaatgg 267
|||| ||||||||||| || ||||||||||||||
Sbjct: 19 aggcgtctggagcatatattttccgccctaatgg 52
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 489,067
Number of Sequences: 392609
Number of extensions: 489067
Number of successful extensions: 44349
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 44306
Number of HSP's gapped (non-prelim): 43
length of query: 1626
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1606
effective length of database: 433,880,813
effective search space: 696812585678
effective search space used: 696812585678
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)