BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAZ2b01.yg.2.1
(541 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA... 72 5e-011
gb|AW299129.1|AW299129 EST305803 KV2 Medicago truncatula cD... 72 5e-011
gb|BQ255277.1|BQ255277 MTNAE06TKM KVKC Medicago truncatula ... 72 5e-011
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 72 5e-011
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 72 5e-011
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 72 5e-011
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 72 5e-011
gb|AI974658.1|AI974658 T113113e KV2 Medicago truncatula cDN... 48 8e-004
gb|AC154035.19| Medicago truncatula clone mth2-114l13, WORK... 44 0.012
gb|CX532373.1|CX532373 s13dNF61A03MJ017_271039 Methyl Jasmo... 40 0.19
>gb|AA660817.1|AA660817 00711 MtRHE Medicago truncatula cDNA 5' similar to sensory
transduction histidine kinase, mRNA sequence
Length = 625
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 497 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 556
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 557 catttgaccttcgttc 572
>gb|AW299129.1|AW299129 EST305803 KV2 Medicago truncatula cDNA clone KV2-12K8, mRNA
sequence
Length = 752
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 430 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 489
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 490 catttgaccttcgttc 505
>gb|BQ255277.1|BQ255277 MTNAE06TKM KVKC Medicago truncatula cDNA clone pKVKC-5A6, mRNA
sequence
Length = 795
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 241 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 300
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 301 catttgaccttcgttc 316
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 51601 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 51660
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 51661 catttgaccttcgttc 51676
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Minus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 128459 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 128400
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 128399 catttgaccttcgttc 128384
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 41119 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 41178
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 41179 catttgaccttcgttc 41194
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 71.9 bits (36), Expect = 5e-011
Identities = 66/76 (86%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagcttgaagcggtgc 75
||||||| || ||||| |||||||| ||||||||||| || |||||||| |||||||| |
Sbjct: 23136 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagctggaagcggttc 23195
Query: 76 cttttgacctgcgttc 91
| |||||||| |||||
Sbjct: 23196 catttgaccttcgttc 23211
>gb|AI974658.1|AI974658 T113113e KV2 Medicago truncatula cDNA clone pKV2-1F5, mRNA sequence
Length = 270
Score = 48.1 bits (24), Expect = 8e-004
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 16 taaatgatgtccttgatcgagcaaagattgaagctggaaagttagagc 63
||||||| || ||||| |||||||| ||||||||||| || |||||||
Sbjct: 223 taaatgaagtgcttgaccgagcaaaaattgaagctggcaaattagagc 270
>gb|AC154035.19| Medicago truncatula clone mth2-114l13, WORKING DRAFT SEQUENCE, 5
ordered pieces
Length = 92662
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gttatttccttattttcttcaa 126
||||||||||||||||||||||
Sbjct: 61136 gttatttccttattttcttcaa 61157
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gttatttccttattttcttcaa 126
||||||||||||||||||||||
Sbjct: 47065 gttatttccttattttcttcaa 47086
Score = 44.1 bits (22), Expect = 0.012
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 105 gttatttccttattttcttcaa 126
||||||||||||||||||||||
Sbjct: 44763 gttatttccttattttcttcaa 44784
>gb|CX532373.1|CX532373 s13dNF61A03MJ017_271039 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.19
Identities = 41/48 (85%)
Strand = Plus / Plus
Query: 36 gcaaagattgaagctggaaagttagagcttgaagcggtgccttttgac 83
|||||||||||| ||| ||| |||||||||| || |||| |||||||
Sbjct: 126 gcaaagattgaatttggtaagctagagcttgaggcagtgctttttgac 173
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 133,002
Number of Sequences: 392609
Number of extensions: 133002
Number of successful extensions: 10082
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10063
Number of HSP's gapped (non-prelim): 19
length of query: 541
length of database: 441,732,993
effective HSP length: 19
effective length of query: 522
effective length of database: 434,273,422
effective search space: 226690726284
effective search space used: 226690726284
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)