BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAW3a11.yg.2.1
(969 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower M... 224 1e-056
gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula ... 123 3e-026
gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORK... 100 4e-019
gb|AW981266.1|AW981266 EST392419 DSIL Medicago truncatula c... 74 2e-011
gb|BE205173.1|BE205173 EST397849 KV0 Medicago truncatula cD... 74 2e-011
gb|CA918792.1|CA918792 EST636510 MTUS Medicago truncatula c... 74 2e-011
gb|CF068061.1|CF068061 EST668782 MTUS Medicago truncatula c... 74 2e-011
gb|AC146721.7| Medicago truncatula clone mth2-145n10, compl... 74 2e-011
gb|AC148653.1| Medicago truncatula chromosome unknown clone... 56 6e-006
emb|CR341503.1| mte1-73J4RM1 BAC end, cultivar Jemalong A17... 52 9e-005
gb|AL369437.1|AL369437 MtBA31B01R1 MtBA Medicago truncatula... 52 9e-005
gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone m... 52 9e-005
gb|CG920948.1|CG920948 MBEHQ60TR mth2 Medicago truncatula g... 42 0.086
gb|AL387410.1|AL387410 MtBC42C12R1 MtBC Medicago truncatula... 42 0.086
gb|BG450898.1|BG450898 NF095A08DT1F1055 Drought Medicago tr... 42 0.086
gb|BQ152923.1|BQ152923 NF026G04IR1F1036 Irradiated Medicago... 42 0.086
gb|BQ152980.1|BQ152980 NF027D05IR1F1046 Irradiated Medicago... 42 0.086
gb|BQ155354.1|BQ155354 NF079E12IR1F1099 Irradiated Medicago... 42 0.086
gb|AJ499070.1|AJ499070 AJ499070 MTPOSE Medicago truncatula ... 42 0.086
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.086
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 42 0.086
gb|AC141922.19| Medicago truncatula clone mth2-9n11, comple... 42 0.086
gb|AC142094.12| Medicago truncatula clone mth2-34h6, comple... 42 0.086
gb|AC170800.5| Medicago truncatula clone mth2-32n7, complet... 42 0.086
gb|AC144931.28| Medicago truncatula clone mth2-22b18, compl... 42 0.086
gb|AL387409.1|AL387409 MtBC42C12F1 MtBC Medicago truncatula... 40 0.34
gb|BQ122225.1|BQ122225 EST607801 GLSD Medicago truncatula c... 40 0.34
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.34
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.34
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.34
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.34
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 40 0.34
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.34
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.34
gb|AC141115.22| Medicago truncatula clone mth2-16b23, compl... 40 0.34
gb|AC142396.25| Medicago truncatula clone mth2-6g9, complet... 40 0.34
emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2... 40 0.34
gb|AC144504.7| Medicago truncatula clone mth2-34c9, WORKING... 40 0.34
>gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower Medicago truncatula cDNA clone
NF012D10FL 5', mRNA sequence
Length = 685
Score = 224 bits (113), Expect = 1e-056
Identities = 172/192 (89%)
Strand = Plus / Plus
Query: 145 tttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgat 204
|||||||| ||||||||||||||||| |||||||||||||| ||||| | |||||||||
Sbjct: 396 tttcaccgatttgacaaatatcttaacttttcaaatccacatattgcaagaaactttgat 455
Query: 205 ccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaag 264
|||||||| ||||| ||||| ||||| |||||||| |||||||||| ||||||||| |||
Sbjct: 456 ccaaatgcttgtggttgggcatatggcatgaacatatttgatctgaaggagtggaaaaag 515
Query: 265 aaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttgg 324
|| ||||| ||||| || || |||||||||||||||||||||||||||||||| ||||||
Sbjct: 516 aangatatcactggcatatatcacaaatggcaaaatatgaatgaagacagggtgctttgg 575
Query: 325 aagcttgggaca 336
||||| ||||||
Sbjct: 576 aagctggggaca 587
>gb|BI309958.1|BI309958 EST5311708 GESD Medicago truncatula cDNA clone pGESD4L15 5' end,
mRNA sequence
Length = 731
Score = 123 bits (62), Expect = 3e-026
Identities = 152/182 (83%)
Strand = Plus / Plus
Query: 145 tttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgat 204
|||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 170 tttcaccgattcgacaaatatcttaacttttcaaatccacatattgcaaaaaactttgat 229
Query: 205 ccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaag 264
|| ||||| ||||| ||||| || || |||||||| |||||| ||| || |||||| |||
Sbjct: 230 cccaatgcttgtggttgggcatacggaatgaacatgtttgatttgaaggtgtggaaaaag 289
Query: 265 aaagatattactgggatctaccacaaatggcaaaatatgaatgaagacagggtcctttgg 324
|| || |||||||| || || |||| ||||| ||| |||||||||||||||| || |||
Sbjct: 290 aaggacattactggcatatatcacaggtggcagaatttgaatgaagacagggtactatgg 349
Query: 325 aa 326
||
Sbjct: 350 aa 351
Score = 58.0 bits (29), Expect = 1e-006
Identities = 122/153 (79%)
Strand = Plus / Plus
Query: 388 tcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagacaat 447
||||||||||| || || || || |||| ||||| || || ||| ||||||| || |||
Sbjct: 413 tcatggcatgtactcggtttgggttacagtccaagtatagatcgtacagagattgagaat 472
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaag 507
|| || || || || |||||||| || |||||||||||| | ||| |||| ||||| |||
Sbjct: 473 gcagcagttgtacactacaatggtaatatgaagccatggttagagatagccatgacaaag 532
Query: 508 taccgaccatattggaccaagtatatcaagtat 540
|| || || || |||||||| ||| ||||||||
Sbjct: 533 tatcgcccttactggaccaaatatgtcaagtat 565
>gb|AC147014.24| Medicago truncatula clone mth2-164l15, WORKING DRAFT SEQUENCE
Length = 127679
Score = 99.6 bits (50), Expect = 4e-019
Identities = 113/134 (84%)
Strand = Plus / Minus
Query: 145 tttcaccgttttgacaaatatcttaatttttcaaatccacacattgctcggaactttgat 204
|||||||| || |||||||||||||| |||||||||||||| ||||| |||||||||
Sbjct: 87288 tttcaccgattcgacaaatatcttaacttttcaaatccacatattgcaaaaaactttgat 87229
Query: 205 ccaaatgcatgtggctgggcttatgggatgaacatctttgatctgagggagtggaagaag 264
|| ||||| ||||| ||||| || || |||||||| |||||| ||| || |||||| |||
Sbjct: 87228 cccaatgcttgtggttgggcatacggaatgaacatgtttgatttgaaggtgtggaaaaag 87169
Query: 265 aaagatattactgg 278
|| || ||||||||
Sbjct: 87168 aaggacattactgg 87155
Score = 58.0 bits (29), Expect = 1e-006
Identities = 122/153 (79%)
Strand = Plus / Minus
Query: 388 tcatggcatgttcttggattaggatacaacccaagcattgaccgttcagagatagacaat 447
||||||||||| || || || || |||| ||||| || || ||| ||||||| || |||
Sbjct: 86730 tcatggcatgtactcggtttgggttacagtccaagtatagatcgtacagagattgagaat 86671
Query: 448 gctgctgtggttcattacaatgggaacatgaagccatggctggagctagcaatgaccaag 507
|| || || || || |||||||| || |||||||||||| | ||| |||| ||||| |||
Sbjct: 86670 gcagcagttgtacactacaatggtaatatgaagccatggttagagatagccatgacaaag 86611
Query: 508 taccgaccatattggaccaagtatatcaagtat 540
|| || || || |||||||| ||| ||||||||
Sbjct: 86610 tatcgcccttactggaccaaatatgtcaagtat 86578
>gb|AW981266.1|AW981266 EST392419 DSIL Medicago truncatula cDNA clone pDSIL-12F23, mRNA
sequence
Length = 667
Score = 73.8 bits (37), Expect = 2e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 377 cactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca- 435
|||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | | | |
Sbjct: 100 cactggacaaatcatggcatgtacttggattaggatacaatccaagtatt-agcatggat 158
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||| ||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 159 gagatcaacaatgctgctgttattcattacaatggaaacatgaaaccttggct 211
>gb|BE205173.1|BE205173 EST397849 KV0 Medicago truncatula cDNA clone pKV0-20H11, mRNA
sequence
Length = 585
Score = 73.8 bits (37), Expect = 2e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 377 cactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca- 435
|||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | | | |
Sbjct: 566 cactggacaaatcatggcatgtacttggattaggatacaatccaagtatt-agcatggat 508
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||| ||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 507 gagatcaacaatgctgctgttattcattacaatggaaacatgaaaccttggct 455
>gb|CA918792.1|CA918792 EST636510 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
sequence
Length = 667
Score = 73.8 bits (37), Expect = 2e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 377 cactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca- 435
|||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | | | |
Sbjct: 553 cactggacaaatcatggcatgtacttggattaggatacaatccaagtatt-agcatggat 495
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||| ||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 494 gagatcaacaatgctgctgttattcattacaatggaaacatgaaaccttggct 442
>gb|CF068061.1|CF068061 EST668782 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
sequence
Length = 605
Score = 73.8 bits (37), Expect = 2e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Plus
Query: 377 cactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca- 435
|||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | | | |
Sbjct: 39 cactggacaaatcatggcatgtacttggattaggatacaatccaagtatt-agcatggat 97
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||| ||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 98 gagatcaacaatgctgctgttattcattacaatggaaacatgaaaccttggct 150
>gb|AC146721.7| Medicago truncatula clone mth2-145n10, complete sequence
Length = 133097
Score = 73.8 bits (37), Expect = 2e-011
Identities = 96/113 (84%), Gaps = 2/113 (1%)
Strand = Plus / Minus
Query: 377 cactggacaagtcatggcatgttcttggattaggatacaacccaagcattgaccgttca- 435
|||||||||| ||||||||||| ||||||||||||||||| ||||| ||| | | | |
Sbjct: 46533 cactggacaaatcatggcatgtacttggattaggatacaatccaagtatt-agcatggat 46475
Query: 436 gagatagacaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||| ||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 46474 gagatcaacaatgctgctgttattcattacaatggaaacatgaaaccttggct 46422
>gb|AC148653.1| Medicago truncatula chromosome unknown clone mte1-26k20, *** SEQUENCING
IN PROGRESS ***, 11 unordered pieces
Length = 147635
Score = 56.0 bits (28), Expect = 6e-006
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 196 aactttgatccaaatgcatgtggctgggcttatgggatgaacat 239
|||||||||||||||| ||||| ||||||||||| ||||||||
Sbjct: 24536 aactttgatccaaatgaatgtgcttgggcttatggcatgaacat 24493
>emb|CR341503.1| mte1-73J4RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 471
Score = 52.0 bits (26), Expect = 9e-005
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 303 gaatgaagacagggtcctttggaagcttgggaca 336
||||||||||||||| ||||||||||| ||||||
Sbjct: 463 gaatgaagacagggtgctttggaagctggggaca 430
>gb|AL369437.1|AL369437 MtBA31B01R1 MtBA Medicago truncatula cDNA clone MtBA31B01 T7, mRNA
sequence
Length = 510
Score = 52.0 bits (26), Expect = 9e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 443 acaatgctgctgtggttcattacaatgggaacatgaagccatggct 488
||||||||||||| ||||||||||||| |||||||| || |||||
Sbjct: 4 acaatgctgctgttattcattacaatggaaacatgaaaccttggct 49
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
Length = 172016
Score = 52.0 bits (26), Expect = 9e-005
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 463 tacaatgggaacatgaagccatggctggag 492
|||||||||||||||||||||||| |||||
Sbjct: 52141 tacaatgggaacatgaagccatggttggag 52112
>gb|CG920948.1|CG920948 MBEHQ60TR mth2 Medicago truncatula genomic clone 58I23, DNA
sequence
Length = 841
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 303 gaactttgatccaaatgcatg 283
>gb|AL387410.1|AL387410 MtBC42C12R1 MtBC Medicago truncatula cDNA clone MtBC42C12 T7, mRNA
sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 14 gaactttgatccaaatgcatg 34
>gb|BG450898.1|BG450898 NF095A08DT1F1055 Drought Medicago truncatula cDNA clone NF095A08DT
5', mRNA sequence
Length = 463
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 2 gaactttgatccaaatgcatg 22
>gb|BQ152923.1|BQ152923 NF026G04IR1F1036 Irradiated Medicago truncatula cDNA clone
NF026G04IR 5', mRNA sequence
Length = 507
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 28 gaactttgatccaaatgcatg 48
>gb|BQ152980.1|BQ152980 NF027D05IR1F1046 Irradiated Medicago truncatula cDNA clone
NF027D05IR 5', mRNA sequence
Length = 473
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 3 gaactttgatccaaatgcatg 23
>gb|BQ155354.1|BQ155354 NF079E12IR1F1099 Irradiated Medicago truncatula cDNA clone
NF079E12IR 5', mRNA sequence
Length = 499
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 3 gaactttgatccaaatgcatg 23
>gb|AJ499070.1|AJ499070 AJ499070 MTPOSE Medicago truncatula cDNA clone mt--acc955211g11,
mRNA sequence
Length = 472
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 38 gaactttgatccaaatgcatg 58
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 299 agtacctgcccgggcggccgc 319
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 949 agtacctgcccgggcggccgc 969
|||||||||||||||||||||
Sbjct: 340 agtacctgcccgggcggccgc 320
>gb|AC141922.19| Medicago truncatula clone mth2-9n11, complete sequence
Length = 107448
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 56339 gaactttgatccaaatgcatg 56359
>gb|AC142094.12| Medicago truncatula clone mth2-34h6, complete sequence
Length = 151594
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 123720 gaactttgatccaaatgcatg 123700
>gb|AC170800.5| Medicago truncatula clone mth2-32n7, complete sequence
Length = 99712
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 45858 gaactttgatccaaatgcatg 45878
>gb|AC144931.28| Medicago truncatula clone mth2-22b18, complete sequence
Length = 122821
Score = 42.1 bits (21), Expect = 0.086
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 195 gaactttgatccaaatgcatg 215
|||||||||||||||||||||
Sbjct: 27875 gaactttgatccaaatgcatg 27895
>gb|AL387409.1|AL387409 MtBC42C12F1 MtBC Medicago truncatula cDNA clone MtBC42C12 T3, mRNA
sequence
Length = 478
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 aactttgatccaaatgcatg 215
||||||||||||||||||||
Sbjct: 3 aactttgatccaaatgcatg 22
>gb|BQ122225.1|BQ122225 EST607801 GLSD Medicago truncatula cDNA clone pGLSD-28G10, mRNA
sequence
Length = 476
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 196 aactttgatccaaatgcatg 215
||||||||||||||||||||
Sbjct: 4 aactttgatccaaatgcatg 23
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgc 223
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 45 gtacctgcccgggcggccgc 26
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 949 agtacctgcccgggcggccg 968
||||||||||||||||||||
Sbjct: 20 agtacctgcccgggcggccg 1
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 290 gtacctgcccgggcggccgc 309
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 949 agtacctgcccgggcggccg 968
||||||||||||||||||||
Sbjct: 426 agtacctgcccgggcggccg 445
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 297 gtacctgcccgggcggccgc 278
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 950 gtacctgcccgggcggccgc 969
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
>gb|AC141115.22| Medicago truncatula clone mth2-16b23, complete sequence
Length = 126187
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 249 gagggagtggaagaagaaag 268
||||||||||||||||||||
Sbjct: 28785 gagggagtggaagaagaaag 28766
>gb|AC142396.25| Medicago truncatula clone mth2-6g9, complete sequence
Length = 106058
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 801 atgcatttatattttccgtc 820
||||||||||||||||||||
Sbjct: 49835 atgcatttatattttccgtc 49816
>emb|CR931731.1| Medicago truncatula chromosome 5 clone mth2-83l19, COMPLETE SEQUENCE
Length = 120299
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 160 aaatatcttaatttttcaaa 179
||||||||||||||||||||
Sbjct: 71943 aaatatcttaatttttcaaa 71924
>gb|AC144504.7| Medicago truncatula clone mth2-34c9, WORKING DRAFT SEQUENCE, 8
ordered pieces
Length = 101729
Score = 40.1 bits (20), Expect = 0.34
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 927 ttgtatcagacgataaagtg 946
||||||||||||||||||||
Sbjct: 9934 ttgtatcagacgataaagtg 9915
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 280,965
Number of Sequences: 392609
Number of extensions: 280965
Number of successful extensions: 22039
Number of sequences better than 0.5: 41
Number of HSP's better than 0.5 without gapping: 41
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 21899
Number of HSP's gapped (non-prelim): 138
length of query: 969
length of database: 441,732,993
effective HSP length: 20
effective length of query: 949
effective length of database: 433,880,813
effective search space: 411752891537
effective search space used: 411752891537
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)