BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAN11a10.yg.3.1
(1341 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ153530.1|BQ153530 NF039F04IR1F1042 Irradiated Medicago... 52 1e-004
gb|BG588846.1|BG588846 EST490655 MHRP- Medicago truncatula ... 44 0.030
gb|BE239962.1|BE239962 EST404011 MHRP- Medicago truncatula ... 42 0.12
gb|BI311494.1|BI311494 EST5313244 GESD Medicago truncatula ... 42 0.12
gb|BQ123042.1|BQ123042 EST608618 GLSD Medicago truncatula c... 42 0.12
gb|BQ123072.1|BQ123072 EST608648 GLSD Medicago truncatula c... 42 0.12
gb|BQ124547.1|BQ124547 EST610123 GLSD Medicago truncatula c... 42 0.12
gb|CA858922.1|CA858922 EST636177 GLSD Medicago truncatula c... 42 0.12
gb|CX517722.1|CX517722 s13dNF23D01VI014_420113 Virus-Infect... 42 0.12
gb|DW017859.1|DW017859 EST1226820 MTY Medicago truncatula c... 42 0.12
gb|AC140023.13| Medicago truncatula clone mth2-32h4, comple... 40 0.47
>gb|BQ153530.1|BQ153530 NF039F04IR1F1042 Irradiated Medicago truncatula cDNA clone
NF039F04IR 5', mRNA sequence
Length = 450
Score = 52.0 bits (26), Expect = 1e-004
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggt 621
|||||||| || ||||| ||||||||||||||||||||
Sbjct: 404 ggacctggaggatggaatgatcctgacatgcttgaggt 441
>gb|BG588846.1|BG588846 EST490655 MHRP- Medicago truncatula cDNA clone pMHRP-57P3, mRNA
sequence
Length = 653
Score = 44.1 bits (22), Expect = 0.030
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 584 ggacctggcgggtggaacgatcctgacatgcttgaggt 621
|||||||| || ||||| |||||||| |||||||||||
Sbjct: 12 ggacctggtggttggaatgatcctgatatgcttgaggt 49
>gb|BE239962.1|BE239962 EST404011 MHRP- Medicago truncatula cDNA clone pMHRP-41G4, mRNA
sequence
Length = 537
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 277 gacctggtggttggaatgatcctgatatgcttgaggt 313
>gb|BI311494.1|BI311494 EST5313244 GESD Medicago truncatula cDNA clone pGESD13C19 5' end,
mRNA sequence
Length = 683
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 332 gacctggtggttggaatgatcctgatatgcttgaggt 368
>gb|BQ123042.1|BQ123042 EST608618 GLSD Medicago truncatula cDNA clone pGLSD-30P18, mRNA
sequence
Length = 804
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 506 gacctggtggttggaatgatcctgatatgcttgaggt 542
>gb|BQ123072.1|BQ123072 EST608648 GLSD Medicago truncatula cDNA clone pGLSD-31E5, mRNA
sequence
Length = 657
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 358 gacctggtggttggaatgatcctgatatgcttgaggt 394
>gb|BQ124547.1|BQ124547 EST610123 GLSD Medicago truncatula cDNA clone pGLSD-35H21, mRNA
sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 560 gacctggtggttggaatgatcctgatatgcttgaggt 596
>gb|CA858922.1|CA858922 EST636177 GLSD Medicago truncatula cDNA clone pGLSD-39O16, mRNA
sequence
Length = 392
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 338 gacctggtggttggaatgatcctgatatgcttgaggt 374
>gb|CX517722.1|CX517722 s13dNF23D01VI014_420113 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 135 gacctggtggttggaatgatcctgatatgcttgaggt 171
>gb|DW017859.1|DW017859 EST1226820 MTY Medicago truncatula cDNA clone MTYAZ07, mRNA
sequence
Length = 682
Score = 42.1 bits (21), Expect = 0.12
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 585 gacctggcgggtggaacgatcctgacatgcttgaggt 621
||||||| || ||||| |||||||| |||||||||||
Sbjct: 45 gacctggtggttggaatgatcctgatatgcttgaggt 81
>gb|AC140023.13| Medicago truncatula clone mth2-32h4, complete sequence
Length = 152468
Score = 40.1 bits (20), Expect = 0.47
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1181 aggagtgcgatggaggaata 1200
||||||||||||||||||||
Sbjct: 89099 aggagtgcgatggaggaata 89118
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 180,979
Number of Sequences: 392609
Number of extensions: 180979
Number of successful extensions: 12557
Number of sequences better than 0.5: 11
Number of HSP's better than 0.5 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12540
Number of HSP's gapped (non-prelim): 17
length of query: 1341
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1321
effective length of database: 433,880,813
effective search space: 573156553973
effective search space used: 573156553973
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)