BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAH2a02.xg.2.1
(644 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC152156.30| Medicago truncatula clone mth2-136k22, WORK... 159 4e-037
gb|AW688555.1|AW688555 NF008H12ST1F1000 Developing stem Med... 107 1e-021
gb|CG957685.1|CG957685 MBEJN67TFB mth2 Medicago truncatula ... 94 2e-017
gb|CG964268.1|CG964268 MBEJJ08TR mth2 Medicago truncatula g... 94 2e-017
gb|AW774442.1|AW774442 EST333593 KV3 Medicago truncatula cD... 80 3e-013
gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-... 80 3e-013
gb|AC137522.10| Medicago truncatula clone mth2-9h8, complet... 80 3e-013
gb|AW688376.1|AW688376 NF006F09ST1F1000 Developing stem Med... 60 2e-007
gb|BF644570.1|BF644570 NF063C08EC1F1065 Elicited cell cultu... 60 2e-007
gb|AW693875.2|AW693875 NF070A05ST1F1036 Developing stem Med... 60 2e-007
gb|AW690834.2|AW690834 NF039E09ST1F1000 Developing stem Med... 60 2e-007
gb|CB892280.1|CB892280 EST649249 KV3 Medicago truncatula cD... 60 2e-007
gb|CX525832.1|CX525832 s13dNF31D07AT062_509408 Aphid-Infect... 60 2e-007
gb|AC150787.15| Medicago truncatula clone mth2-171n13, comp... 60 2e-007
gb|CG940967.1|CG940967 MBEBN87TF mth2 Medicago truncatula g... 52 6e-005
gb|CG956220.1|CG956220 MBEIB91TF mth2 Medicago truncatula g... 52 6e-005
emb|CR335942.1| mte1-66F18FM1 BAC end, cultivar Jemalong A1... 52 6e-005
emb|CR307292.1| mte1-28M7FM1 BAC end, cultivar Jemalong A17... 52 6e-005
gb|AW773751.1|AW773751 EST332737 KV3 Medicago truncatula cD... 52 6e-005
gb|BF639259.1|BF639259 NF029H07IN1F1061 Insect herbivory Me... 52 6e-005
gb|AC131248.14| Medicago truncatula clone mth2-28n22, compl... 52 6e-005
gb|AC138056.33| Medicago truncatula clone mth2-13i6, comple... 52 6e-005
gb|AC126016.13| Medicago truncatula clone mth2-15g22, WORKI... 52 6e-005
emb|CR974443.6| M.truncatula DNA sequence from clone MTH2-3... 52 6e-005
gb|BG454325.1|BG454325 NF110E08LF1F1056 Developing leaf Med... 50 2e-004
gb|BG644386.1|BG644386 EST506005 KV3 Medicago truncatula cD... 50 2e-004
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 46 0.004
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 46 0.004
gb|CG933577.1|CG933577 MBENI59TF mth2 Medicago truncatula g... 44 0.014
gb|CB894714.1|CB894714 EST647506 HOGA Medicago truncatula c... 44 0.014
gb|AC145329.35| Medicago truncatula clone mth2-8i21, comple... 44 0.014
gb|BF641035.1|BF641035 NF014E05IN1F1038 Insect herbivory Me... 42 0.057
gb|BI265826.1|BI265826 NF088G06IN1F1052 Insect herbivory Me... 42 0.057
gb|AC150799.4| Medicago truncatula chromosome 2 BAC clone m... 42 0.057
>gb|AC152156.30| Medicago truncatula clone mth2-136k22, WORKING DRAFT SEQUENCE, 7
unordered pieces
Length = 293363
Score = 159 bits (80), Expect = 4e-037
Identities = 170/200 (85%)
Strand = Plus / Minus
Query: 269 gatatatttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacact 328
||||| ||||| || ||||||||||| ||||||||||| ||||| ||||||||||||||
Sbjct: 1670 gatatctttgtttcaactgctgatcctgagaaagaaccaccacttgtcacagcaaacacc 1611
Query: 329 attctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgat 388
|| |||| || | ||||||||||| || || |||||||||||||||||||||||||||
Sbjct: 1610 atcttgtcgattttagctgctgactatccagttgagaagctttcttgctatgtttctgat 1551
Query: 389 gatggaggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatg 448
||||| || || || | |||||||| || |||||||| |||||||||||||| ||||
Sbjct: 1550 gatgggggtgcacttttaacttttgaggcaatggctgaggctgctagctttgccaataac 1491
Query: 449 tgggttcctttctgtcgcaa 468
|||||||| ||||| |||||
Sbjct: 1490 tgggttccattctgccgcaa 1471
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtctgcctgactc 621
|||||||| ||||||||||| || ||||||||| |||| |||||
Sbjct: 1361 gagtatgatgagttcaaggttagaatcaatggtttgcccgactc 1318
>gb|AW688555.1|AW688555 NF008H12ST1F1000 Developing stem Medicago truncatula cDNA clone
NF008H12ST 5', mRNA sequence
Length = 685
Score = 107 bits (54), Expect = 1e-021
Identities = 107/125 (85%)
Strand = Plus / Plus
Query: 269 gatatatttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacact 328
||||| ||||| || ||||||||||| || |||||||| ||||| ||||||||||||||
Sbjct: 551 gatatctttgtttcaactgctgatcctganaaagaaccaccacttgtcacagcaaacacc 610
Query: 329 attctgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgat 388
|| |||| || | ||||||||||| || || || ||||||||||||||||||||||||
Sbjct: 611 atcttgtcgattttagctgctgactatccagttgaaaagctttcttgctatgtttctgat 670
Query: 389 gatgg 393
|||||
Sbjct: 671 gatgg 675
>gb|CG957685.1|CG957685 MBEJN67TFB mth2 Medicago truncatula genomic clone 69K14, DNA
sequence
Length = 878
Score = 93.7 bits (47), Expect = 2e-017
Identities = 89/103 (86%)
Strand = Plus / Plus
Query: 366 agctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagccatggctg 425
|||||||||||||||||||||||||||| || || || | |||||||| || |||||||
Sbjct: 1 agctttcttgctatgtttctgatgatgggggtgcacttttaacttttgaggcaatggctg 60
Query: 426 aagctgctagctttgctaatatgtgggttcctttctgtcgcaa 468
| |||||||||||||| |||| |||||||| ||||| |||||
Sbjct: 61 aggctgctagctttgccaataactgggttccattctgccgcaa 103
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 578 gagtatgacgagttcaaggtcaggatcaatggtctgcctgactc 621
|||||||| ||||||||||| || ||||||||| |||| |||||
Sbjct: 213 gagtatgatgagttcaaggttagaatcaatggtttgcccgactc 256
>gb|CG964268.1|CG964268 MBEJJ08TR mth2 Medicago truncatula genomic clone 68A16, DNA
sequence
Length = 876
Score = 93.7 bits (47), Expect = 2e-017
Identities = 98/115 (85%)
Strand = Plus / Minus
Query: 348 ctgactaccctgtggagaagctttcttgctatgtttctgatgatggaggggctctcctga 407
||||||| || || ||||||||||||||||||||||||||||||||||| || || | |
Sbjct: 876 ctgactatccagttgagaagctttcttgctatgtttctgatgatggaggtgcacttttaa 817
Query: 408 cttttgaagccatggctgaagctgctagctttgctaatatgtgggttcctttctg 462
||||| | || |||||||||||||||| || ||||| || |||||||| |||||
Sbjct: 816 cttttaaggcaatggctgaagctgctacctgtgctagtaattgggttccattctg 762
>gb|AW774442.1|AW774442 EST333593 KV3 Medicago truncatula cDNA clone pKV3-22H5, mRNA
sequence
Length = 713
Score = 79.8 bits (40), Expect = 3e-013
Identities = 82/96 (85%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||||||| |||||||||||||| |||| || |||||||||| |||||| ||
Sbjct: 607 gaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatcc 666
Query: 358 tgtggagaagctttcttgctatgtttctgatgatgg 393
|| || || || | ||||||||||| ||||||||
Sbjct: 667 agttgataaagttgcatgctatgtttcggatgatgg 702
>gb|AC148821.1| Medicago truncatula chromosome 2 clone mth2-80k8, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 122271
Score = 79.8 bits (40), Expect = 3e-013
Identities = 100/120 (83%)
Strand = Plus / Plus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||||||| |||||||||||||| |||| || |||||||||| |||||| ||
Sbjct: 109000 gaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatcc 109059
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagc 417
|| || || || | ||||||||||| |||||||| | ||| | || |||||||||||
Sbjct: 109060 agttgataaagttgcatgctatgtttcggatgatggtgctgctatgctaacttttgaagc 109119
>gb|AC137522.10| Medicago truncatula clone mth2-9h8, complete sequence
Length = 117716
Score = 79.8 bits (40), Expect = 3e-013
Identities = 100/120 (83%)
Strand = Plus / Minus
Query: 298 gaaagaacctccactggtcacagcaaacactattctgtccatccttgctgctgactaccc 357
|||||||||||||||| |||||||||||||| |||| || |||||||||| |||||| ||
Sbjct: 96703 gaaagaacctccactgatcacagcaaacactgttctatctatccttgctgttgactatcc 96644
Query: 358 tgtggagaagctttcttgctatgtttctgatgatggaggggctctcctgacttttgaagc 417
|| || || || | ||||||||||| |||||||| | ||| | || |||||||||||
Sbjct: 96643 agttgataaagttgcatgctatgtttcggatgatggtgctgctatgctaacttttgaagc 96584
>gb|AW688376.1|AW688376 NF006F09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF006F09ST 5', mRNA sequence
Length = 702
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 203 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 262
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 263 gtatctgatgatgg 276
>gb|BF644570.1|BF644570 NF063C08EC1F1065 Elicited cell culture Medicago truncatula cDNA
clone NF063C08EC 5', mRNA sequence
Length = 549
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 262 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 321
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 322 gtatctgatgatgg 335
>gb|AW693875.2|AW693875 NF070A05ST1F1036 Developing stem Medicago truncatula cDNA clone
NF070A05ST 5', mRNA sequence
Length = 392
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 100 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 159
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 160 gtatctgatgatgg 173
>gb|AW690834.2|AW690834 NF039E09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF039E09ST 5', mRNA sequence
Length = 370
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 8 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 67
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 68 gtatctgatgatgg 81
>gb|CB892280.1|CB892280 EST649249 KV3 Medicago truncatula cDNA clone KV3-53B20, mRNA
sequence
Length = 851
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 142 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 201
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 202 gtatctgatgatgg 215
>gb|CX525832.1|CX525832 s13dNF31D07AT062_509408 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 611
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 425 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 484
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 485 gtatctgatgatgg 498
>gb|AC150787.15| Medicago truncatula clone mth2-171n13, complete sequence
Length = 82665
Score = 60.0 bits (30), Expect = 2e-007
Identities = 63/74 (85%)
Strand = Plus / Minus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| |||||||||||
Sbjct: 51878 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaaggtttcttgctat 51819
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 51818 gtatctgatgatgg 51805
>gb|CG940967.1|CG940967 MBEBN87TF mth2 Medicago truncatula genomic clone 20O6, DNA sequence
Length = 807
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 317 acagcaaacactattctgtccatccttgctgctgactaccctgtggagaa 366
|||||||||||| |||| ||||| ||| ||| |||||||||||| |||||
Sbjct: 299 acagcaaacactgttctttccatactttctgttgactaccctgttgagaa 348
>gb|CG956220.1|CG956220 MBEIB91TF mth2 Medicago truncatula genomic clone 60O14, DNA
sequence
Length = 867
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 317 acagcaaacactattctgtccatccttgctgctgactaccctgtggagaa 366
|||||||||||| |||| ||||| ||| ||| |||||||||||| |||||
Sbjct: 307 acagcaaacactgttctttccatactttctgttgactaccctgttgagaa 356
>emb|CR335942.1| mte1-66F18FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 665
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaac 181
||||||| ||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct: 467 tggtttgcattttcatggcttcttgatcagcttccaaagctgtgtcctgtgaac 414
Score = 42.1 bits (21), Expect = 0.057
Identities = 147/189 (77%)
Strand = Plus / Minus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| ||||| || ||||| || || || || || |||||||| ||| |
Sbjct: 320 tttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccatttta 261
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||| | ||| || |||||||| || || |||| ||| | |||||||||||
Sbjct: 260 tctatccttgcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatggt 201
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| ||||| |||| |||||||| | ||||| ||||||| ||||| | | ||||||
Sbjct: 200 ggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattttgggtt 141
Query: 455 cctttctgt 463
|||||||||
Sbjct: 140 cctttctgt 132
>emb|CR307292.1| mte1-28M7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 841
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Minus
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaac 181
||||||| ||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct: 485 tggtttgcattttcatggcttcttgatcagcttccaaagctgtgtcctgtgaac 432
Score = 42.1 bits (21), Expect = 0.057
Identities = 147/189 (77%)
Strand = Plus / Minus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| ||||| || ||||| || || || || || |||||||| ||| |
Sbjct: 338 tttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccatttta 279
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||| | ||| || |||||||| || || |||| ||| | |||||||||||
Sbjct: 278 tctatccttgcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatggt 219
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| ||||| |||| |||||||| | ||||| ||||||| ||||| | | ||||||
Sbjct: 218 ggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattttgggtt 159
Query: 455 cctttctgt 463
|||||||||
Sbjct: 158 cctttctgt 150
>gb|AW773751.1|AW773751 EST332737 KV3 Medicago truncatula cDNA clone pKV3-15D6, mRNA
sequence
Length = 600
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaac 181
||||||| ||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct: 177 tggtttgcattttcatggcttcttgatcagcttccaaagctgtgtcctgtgaac 230
Score = 42.1 bits (21), Expect = 0.057
Identities = 147/189 (77%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| ||||| || ||||| || || || || || |||||||| ||| |
Sbjct: 324 tttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccatttta 383
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||| | ||| || |||||||| || | |||||||| | |||||||||||
Sbjct: 384 tctatccttgcagttgattatcctgtggaaaaagatgcttgctatttgtctgatgatggt 443
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| ||||| |||| |||||||| | ||||| ||||||| ||||| | | ||||||
Sbjct: 444 ggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattttgggtt 503
Query: 455 cctttctgt 463
|||||||||
Sbjct: 504 cctttctgt 512
>gb|BF639259.1|BF639259 NF029H07IN1F1061 Insect herbivory Medicago truncatula cDNA clone
NF029H07IN 5', mRNA sequence
Length = 430
Score = 52.0 bits (26), Expect = 6e-005
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 320 gcaaacactattctgtccatccttgctgctgactaccctgtggagaagctttcttgctat 379
||||||||| || |||| || ||||| | ||| |||||||| || ||| ||||||||||
Sbjct: 329 gcaaacactgttttgtctatacttgccgttgattaccctgtcgacaagggttcttgctat 388
Query: 380 gtttctgatgatgg 393
|| |||||||||||
Sbjct: 389 gtatctgatgatgg 402
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
Length = 136333
Score = 52.0 bits (26), Expect = 6e-005
Identities = 44/50 (88%)
Strand = Plus / Minus
Query: 317 acagcaaacactattctgtccatccttgctgctgactaccctgtggagaa 366
|||||||||||| |||| ||||| ||| ||| |||||||||||| |||||
Sbjct: 103165 acagcaaacactgttctttccatactttctgttgactaccctgttgagaa 103116
>gb|AC138056.33| Medicago truncatula clone mth2-13i6, complete sequence
Length = 157258
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 95 tggctctggggcatgtctgttgtctgcgaa 124
||||| ||||||||||||||||||||||||
Sbjct: 134655 tggctatggggcatgtctgttgtctgcgaa 134684
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 437 tttgctaatatgtgggttcctttctgtcgcaagcacaacattga 480
|||||| || |||||||||| || ||||| ||||||||||||||
Sbjct: 134966 tttgctgatttgtgggttccattttgtcggaagcacaacattga 135009
>gb|AC126016.13| Medicago truncatula clone mth2-15g22, WORKING DRAFT SEQUENCE, 17
unordered pieces
Length = 111506
Score = 52.0 bits (26), Expect = 6e-005
Identities = 47/54 (87%)
Strand = Plus / Plus
Query: 128 tggtttggtttttcatggctgctcgaccagctgccaaagctgtgccctgtgaac 181
||||||| ||||||||||| || || ||||| ||||||||||| |||||||||
Sbjct: 32271 tggtttgcattttcatggcttcttgatcagcttccaaagctgtgtcctgtgaac 32324
Score = 44.1 bits (22), Expect = 0.014
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 526 caagaacaaggttcgccaggattttgtcaaggacaggaggagggtcaagagggagtatga 585
|||||||||||| || ||| ||||| | ||| ||||| ||||| |||||||| |||||
Sbjct: 32669 caagaacaaggtccggttggactttgttagggagaggagaagggtgaagagggaatatga 32728
Query: 586 cgagttcaaggtcaggatcaat 607
|| ||||| || |||||||||
Sbjct: 32729 tgaattcaaagtgaggatcaat 32750
Score = 42.1 bits (21), Expect = 0.057
Identities = 147/189 (77%)
Strand = Plus / Plus
Query: 275 tttgtatctactgctgatccggagaaagaacctccactggtcacagcaaacactattctg 334
||||| || ||||| ||||| || ||||| || || || || || |||||||| ||| |
Sbjct: 32418 tttgtttcaactgcagatccagaaaaagagccacctcttgtaactgcaaacaccatttta 32477
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgga 394
|| |||||||| | ||| || |||||||| || || |||| ||| | |||||||||||
Sbjct: 32478 tctatccttgcagttgattatcctgtggaaaaagttgcttgttatttgtctgatgatggt 32537
Query: 395 ggggctctcctgacttttgaagccatggctgaagctgctagctttgctaatatgtgggtt 454
|| ||||| |||| |||||||| | ||||| ||||||| ||||| | | ||||||
Sbjct: 32538 ggagctcttttgacatttgaagctcttgctgagactgctagttttgcaagattttgggtt 32597
Query: 455 cctttctgt 463
|||||||||
Sbjct: 32598 cctttctgt 32606
>emb|CR974443.6| M.truncatula DNA sequence from clone MTH2-35O18 on chromosome 3,
complete sequence
Length = 115456
Score = 52.0 bits (26), Expect = 6e-005
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 95 tggctctggggcatgtctgttgtctgcgaa 124
||||| ||||||||||||||||||||||||
Sbjct: 56629 tggctatggggcatgtctgttgtctgcgaa 56658
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Plus
Query: 437 tttgctaatatgtgggttcctttctgtcgcaagcacaacattga 480
|||||| || |||||||||| || ||||| ||||||||||||||
Sbjct: 56940 tttgctgatttgtgggttccattttgtcggaagcacaacattga 56983
>gb|BG454325.1|BG454325 NF110E08LF1F1056 Developing leaf Medicago truncatula cDNA clone
NF110E08LF 5', mRNA sequence
Length = 662
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 353 taccctgtggagaagctttcttgctatgtttctgatgatgg 393
|||||||| || ||| ||||||||||||| |||||||||||
Sbjct: 25 taccctgtcgacaaggtttcttgctatgtatctgatgatgg 65
>gb|BG644386.1|BG644386 EST506005 KV3 Medicago truncatula cDNA clone pKV3-37K9 5' end, mRNA
sequence
Length = 658
Score = 50.1 bits (25), Expect = 2e-004
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 333 tgtccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatg 392
||||||||||||||| ||| || |||||||| ||| | || |||||||| || |||||||
Sbjct: 329 tgtccatccttgctgttgattatcctgtggacaaggtctcatgctatgtgtcagatgatg 388
Query: 393 g 393
|
Sbjct: 389 g 389
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgg 393
||||| ||||||| ||||||||| ||||| ||| | || || ||||| |||||||||||
Sbjct: 88821 tccattcttgctgttgactacccagtggataaggtctcatgttatgtctctgatgatgg 88879
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 335 tccatccttgctgctgactaccctgtggagaagctttcttgctatgtttctgatgatgg 393
||||| ||||||| ||||||||| ||||| ||| | || || ||||| |||||||||||
Sbjct: 124799 tccattcttgctgttgactacccagtggataaggtctcatgttatgtctctgatgatgg 124857
>gb|CG933577.1|CG933577 MBENI59TF mth2 Medicago truncatula genomic clone 8I21, DNA sequence
Length = 853
Score = 44.1 bits (22), Expect = 0.014
Identities = 67/82 (81%)
Strand = Plus / Plus
Query: 526 caagaacaaggttcgccaggattttgtcaaggacaggaggagggtcaagagggagtatga 585
|||||||||||| || ||| ||||| | ||| ||||| ||||| |||||||| |||||
Sbjct: 31 caagaacaaggtccggttggactttgttagggagaggagaagggtgaagagggaatatga 90
Query: 586 cgagttcaaggtcaggatcaat 607
|| ||||| || |||||||||
Sbjct: 91 tgaattcaaagtgaggatcaat 112
>gb|CB894714.1|CB894714 EST647506 HOGA Medicago truncatula cDNA clone HOGA-32K17, mRNA
sequence
Length = 799
Score = 44.1 bits (22), Expect = 0.014
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 356 cctgtggagaagctttcttgctatgtttctgatgatgg 393
||||| || ||| ||||||||||||| |||||||||||
Sbjct: 35 cctgtcgacaaggtttcttgctatgtatctgatgatgg 72
>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence
Length = 123357
Score = 44.1 bits (22), Expect = 0.014
Identities = 67/82 (81%)
Strand = Plus / Minus
Query: 526 caagaacaaggttcgccaggattttgtcaaggacaggaggagggtcaagagggagtatga 585
|||||||||||| || ||| ||||| | ||| ||||| ||||| |||||||| |||||
Sbjct: 123332 caagaacaaggtccggttggactttgttagggagaggagaagggtgaagagggaatatga 123273
Query: 586 cgagttcaaggtcaggatcaat 607
|| ||||| || |||||||||
Sbjct: 123272 tgaattcaaagtgaggatcaat 123251
>gb|BF641035.1|BF641035 NF014E05IN1F1038 Insect herbivory Medicago truncatula cDNA clone
NF014E05IN 5', mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 374 tgctatgtttctgatgatgga 394
|||||||||||||||||||||
Sbjct: 402 tgctatgtttctgatgatgga 422
>gb|BI265826.1|BI265826 NF088G06IN1F1052 Insect herbivory Medicago truncatula cDNA clone
NF088G06IN 5', mRNA sequence
Length = 452
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 374 tgctatgtttctgatgatgga 394
|||||||||||||||||||||
Sbjct: 407 tgctatgtttctgatgatgga 427
>gb|AC150799.4| Medicago truncatula chromosome 2 BAC clone mth2-47j13, complete
sequence
Length = 119159
Score = 42.1 bits (21), Expect = 0.057
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 374 tgctatgtttctgatgatgga 394
|||||||||||||||||||||
Sbjct: 37035 tgctatgtttctgatgatgga 37055
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 140,841
Number of Sequences: 392609
Number of extensions: 140841
Number of successful extensions: 9979
Number of sequences better than 0.5: 34
Number of HSP's better than 0.5 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9885
Number of HSP's gapped (non-prelim): 86
length of query: 644
length of database: 441,732,993
effective HSP length: 19
effective length of query: 625
effective length of database: 434,273,422
effective search space: 271420888750
effective search space used: 271420888750
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)