BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE36e08.yg.2.1
(352 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE997625.1|BE997625 EST429348 GVSN Medicago truncatula c... 40 0.12
gb|BE999101.1|BE999101 EST430824 GVSN Medicago truncatula c... 40 0.12
gb|BF005002.1|BF005002 EST433500 DSLC Medicago truncatula c... 40 0.12
gb|BG451868.1|BG451868 NF101A10DT1F1070 Drought Medicago tr... 40 0.12
gb|BG648263.1|BG648263 EST509882 HOGA Medicago truncatula c... 40 0.12
gb|CX530640.1|CX530640 s13dNF57H11MJ093_247296 Methyl Jasmo... 40 0.12
gb|AC136288.23| Medicago truncatula clone mth2-13o7, comple... 40 0.12
gb|AC134522.9| Medicago truncatula clone mth2-12g4, complet... 40 0.12
>gb|BE997625.1|BE997625 EST429348 GVSN Medicago truncatula cDNA clone pGVSN-1N5, mRNA
sequence
Length = 512
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 263 gtagaagtggtagccgtgga 282
>gb|BE999101.1|BE999101 EST430824 GVSN Medicago truncatula cDNA clone pGVSN-15K1, mRNA
sequence
Length = 623
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 300 gtagaagtggtagccgtgga 319
>gb|BF005002.1|BF005002 EST433500 DSLC Medicago truncatula cDNA clone pDSLC-28P4, mRNA
sequence
Length = 678
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 136 gtagaagtggtagccgtgga 155
>gb|BG451868.1|BG451868 NF101A10DT1F1070 Drought Medicago truncatula cDNA clone NF101A10DT
5', mRNA sequence
Length = 667
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 341 gtagaagtggtagccgtgga 360
>gb|BG648263.1|BG648263 EST509882 HOGA Medicago truncatula cDNA clone pHOGA-19E4 5' end,
mRNA sequence
Length = 675
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 333 gtagaagtggtagccgtgga 352
>gb|CX530640.1|CX530640 s13dNF57H11MJ093_247296 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 679
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 423 gtagaagtggtagccgtgga 442
>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
Length = 110437
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 60234 gtagaagtggtagccgtgga 60215
>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
Length = 129197
Score = 40.1 bits (20), Expect = 0.12
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 35 gtagaagtggtagccgtgga 54
||||||||||||||||||||
Sbjct: 70494 gtagaagtggtagccgtgga 70475
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,738
Number of Sequences: 392609
Number of extensions: 16738
Number of successful extensions: 1173
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 8
length of query: 352
length of database: 441,732,993
effective HSP length: 19
effective length of query: 333
effective length of database: 434,273,422
effective search space: 144613049526
effective search space used: 144613049526
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)