BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= QAE36e08.yg.2.1
         (352 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|BE997625.1|BE997625  EST429348 GVSN Medicago truncatula c...    40   0.12 
gb|BE999101.1|BE999101  EST430824 GVSN Medicago truncatula c...    40   0.12 
gb|BF005002.1|BF005002  EST433500 DSLC Medicago truncatula c...    40   0.12 
gb|BG451868.1|BG451868  NF101A10DT1F1070 Drought Medicago tr...    40   0.12 
gb|BG648263.1|BG648263  EST509882 HOGA Medicago truncatula c...    40   0.12 
gb|CX530640.1|CX530640  s13dNF57H11MJ093_247296 Methyl Jasmo...    40   0.12 
gb|AC136288.23|  Medicago truncatula clone mth2-13o7, comple...    40   0.12 
gb|AC134522.9|  Medicago truncatula clone mth2-12g4, complet...    40   0.12 
>gb|BE997625.1|BE997625 EST429348 GVSN Medicago truncatula cDNA clone pGVSN-1N5, mRNA
           sequence
          Length = 512

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 263 gtagaagtggtagccgtgga 282
>gb|BE999101.1|BE999101 EST430824 GVSN Medicago truncatula cDNA clone pGVSN-15K1, mRNA
           sequence
          Length = 623

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 300 gtagaagtggtagccgtgga 319
>gb|BF005002.1|BF005002 EST433500 DSLC Medicago truncatula cDNA clone pDSLC-28P4, mRNA
           sequence
          Length = 678

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 136 gtagaagtggtagccgtgga 155
>gb|BG451868.1|BG451868 NF101A10DT1F1070 Drought Medicago truncatula cDNA clone NF101A10DT
           5', mRNA sequence
          Length = 667

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 341 gtagaagtggtagccgtgga 360
>gb|BG648263.1|BG648263 EST509882 HOGA Medicago truncatula cDNA clone pHOGA-19E4 5' end,
           mRNA sequence
          Length = 675

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 333 gtagaagtggtagccgtgga 352
>gb|CX530640.1|CX530640 s13dNF57H11MJ093_247296 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 679

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 35  gtagaagtggtagccgtgga 54
           ||||||||||||||||||||
Sbjct: 423 gtagaagtggtagccgtgga 442
>gb|AC136288.23| Medicago truncatula clone mth2-13o7, complete sequence
          Length = 110437

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    gtagaagtggtagccgtgga 54
             ||||||||||||||||||||
Sbjct: 60234 gtagaagtggtagccgtgga 60215
>gb|AC134522.9| Medicago truncatula clone mth2-12g4, complete sequence
          Length = 129197

 Score = 40.1 bits (20), Expect = 0.12
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 35    gtagaagtggtagccgtgga 54
             ||||||||||||||||||||
Sbjct: 70494 gtagaagtggtagccgtgga 70475
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,738
Number of Sequences: 392609
Number of extensions: 16738
Number of successful extensions: 1173
Number of sequences better than  0.5: 8
Number of HSP's better than  0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1165
Number of HSP's gapped (non-prelim): 8
length of query: 352
length of database: 441,732,993
effective HSP length: 19
effective length of query: 333
effective length of database: 434,273,422
effective search space: 144613049526
effective search space used: 144613049526
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)