BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE20c02.yg.2.1
(696 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG951090.1|CG951090 MBEKF50TRB mth2 Medicago truncatula ... 62 7e-008
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 48 0.001
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 46 0.004
gb|BQ123177.1|BQ123177 EST608741 GLSD Medicago truncatula c... 44 0.016
gb|BQ123306.1|BQ123306 EST608882 GLSD Medicago truncatula c... 44 0.016
gb|BQ124352.1|BQ124352 EST609928 GLSD Medicago truncatula c... 44 0.016
gb|BQ148753.1|BQ148753 NF082B09FL1F1076 Developing flower M... 44 0.016
gb|CA989762.1|CA989762 EST643270 GLSD Medicago truncatula c... 44 0.016
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 42 0.061
gb|BQ123142.1|BQ123142 EST608706 GLSD Medicago truncatula c... 40 0.24
gb|BQ123229.1|BQ123229 EST608793 GLSD Medicago truncatula c... 40 0.24
gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 40 0.24
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 40 0.24
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 40 0.24
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.24
>gb|CG951090.1|CG951090 MBEKF50TRB mth2 Medicago truncatula genomic clone 73I4, DNA
sequence
Length = 951
Score = 61.9 bits (31), Expect = 7e-008
Identities = 43/47 (91%)
Strand = Plus / Minus
Query: 483 gcagtagcatgagataggagaatgttatgaacaacaatgtaaggttc 529
|||| |||||| |||| ||||||||||||| ||||||||||||||||
Sbjct: 187 gcagcagcatgggataagagaatgttatgagcaacaatgtaaggttc 141
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtactttt 24
||||||||||||||||||||||||
Sbjct: 320 gcggccgcccgggcaggtactttt 343
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 2 cggccgcccgggcaggtactttt 24
|||||||||||||||||||||||
Sbjct: 445 cggccgcccgggcaggtactttt 423
>gb|BQ123177.1|BQ123177 EST608741 GLSD Medicago truncatula cDNA clone pGLSD-31E14, mRNA
sequence
Length = 657
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 189 atgtagtatgtagtatattgattgat 214
|||||||| |||||||||||||||||
Sbjct: 401 atgtagtaagtagtatattgattgat 376
>gb|BQ123306.1|BQ123306 EST608882 GLSD Medicago truncatula cDNA clone pGLSD-31P23, mRNA
sequence
Length = 870
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 189 atgtagtatgtagtatattgattgat 214
|||||||| |||||||||||||||||
Sbjct: 381 atgtagtaagtagtatattgattgat 356
>gb|BQ124352.1|BQ124352 EST609928 GLSD Medicago truncatula cDNA clone pGLSD-35G3, mRNA
sequence
Length = 514
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 189 atgtagtatgtagtatattgattgat 214
|||||||| |||||||||||||||||
Sbjct: 399 atgtagtaagtagtatattgattgat 374
>gb|BQ148753.1|BQ148753 NF082B09FL1F1076 Developing flower Medicago truncatula cDNA clone
NF082B09FL 5', mRNA sequence
Length = 700
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 189 atgtagtatgtagtatattgattgat 214
|||||||| |||||||||||||||||
Sbjct: 214 atgtagtaagtagtatattgattgat 189
>gb|CA989762.1|CA989762 EST643270 GLSD Medicago truncatula cDNA clone pGLSD-42N15, mRNA
sequence
Length = 636
Score = 44.1 bits (22), Expect = 0.016
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 189 atgtagtatgtagtatattgattgat 214
|||||||| |||||||||||||||||
Sbjct: 29 atgtagtaagtagtatattgattgat 4
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtact 21
|||||||||||||||||||||
Sbjct: 319 gcggccgcccgggcaggtact 299
>gb|BQ123142.1|BQ123142 EST608706 GLSD Medicago truncatula cDNA clone pGLSD-31O7, mRNA
sequence
Length = 844
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 gtagtatgtagtatattgattgat 214
|||| |||||||||||||||||||
Sbjct: 246 gtagaatgtagtatattgattgat 223
>gb|BQ123229.1|BQ123229 EST608793 GLSD Medicago truncatula cDNA clone pGLSD-31O8, mRNA
sequence
Length = 764
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 191 gtagtatgtagtatattgattgat 214
|||| |||||||||||||||||||
Sbjct: 215 gtagaatgtagtatattgattgat 192
>gb|AJ500026.1|AJ500026 AJ500026 MTGIM Medicago truncatula cDNA clone mtgmacc120011f04,
mRNA sequence
Length = 266
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 5 ccgcccgggcaggtactttt 24
||||||||||||||||||||
Sbjct: 266 ccgcccgggcaggtactttt 247
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 223 gcggccgcccgggcaggtac 204
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtactttt 24
||||||| ||||||||||||||||
Sbjct: 14 gcggccggccgggcaggtactttt 37
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 26 gcggccgcccgggcaggtac 45
>gb|AJ500355.1|AJ500355 AJ500355 MTGIM Medicago truncatula cDNA clone mtgmacc120015e03,
mRNA sequence
Length = 643
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 cggccgcccgggcaggtact 21
||||||||||||||||||||
Sbjct: 1 cggccgcccgggcaggtact 20
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.24
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtactttt 24
||||||| ||||||||||||||||
Sbjct: 552 gcggccgtccgggcaggtactttt 529
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 309 gcggccgcccgggcaggtac 290
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 278 gcggccgcccgggcaggtac 297
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 gcggccgcccgggcaggtac 20
||||||||||||||||||||
Sbjct: 5 gcggccgcccgggcaggtac 24
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 138,806
Number of Sequences: 392609
Number of extensions: 138806
Number of successful extensions: 10421
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10399
Number of HSP's gapped (non-prelim): 22
length of query: 696
length of database: 441,732,993
effective HSP length: 19
effective length of query: 677
effective length of database: 434,273,422
effective search space: 294003106694
effective search space used: 294003106694
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)