BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAE12f02.yg.2.1
(290 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cD... 46 0.002
gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved l... 46 0.002
gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula c... 46 0.002
gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula ... 46 0.002
gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula c... 46 0.002
gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula c... 46 0.002
gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula c... 46 0.002
gb|AC131248.14| Medicago truncatula clone mth2-28n22, compl... 46 0.002
gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cD... 40 0.097
gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cD... 40 0.097
gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula c... 40 0.097
gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Med... 40 0.097
gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Med... 40 0.097
gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula c... 40 0.097
gb|AC149572.14| Medicago truncatula clone mth2-116e22, comp... 40 0.097
emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-7... 40 0.097
>gb|AW773919.1|AW773919 EST332905 KV3 Medicago truncatula cDNA clone pKV3-16F23, mRNA
sequence
Length = 525
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 374 gggaagctattctttgcattttgggtcattg 344
>gb|BF638502.1|BF638502 NF060B02PL1F1015 Phosphate starved leaf Medicago truncatula cDNA
clone NF060B02PL 5', mRNA sequence
Length = 480
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 194 gggaagctattctttgcattttgggtcattg 224
>gb|BI309501.1|BI309501 EST530911 GPOD Medicago truncatula cDNA clone pGPOD-13G5 5' end,
mRNA sequence
Length = 691
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 430 gggaagctattctttgcattttgggtcattg 400
>gb|BI311546.1|BI311546 EST5313296 GESD Medicago truncatula cDNA clone pGESD13M17 5' end,
mRNA sequence
Length = 811
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 450 gggaagctattctttgcattttgggtcattg 480
>gb|AJ500002.1|AJ500002 AJ500002 MTGIM Medicago truncatula cDNA clone mtgmacc120011c12,
mRNA sequence
Length = 596
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 387 gggaagctattctttgcattttgggtcattg 357
>gb|AJ499635.1|AJ499635 AJ499635 MTGIM Medicago truncatula cDNA clone mtgmacc120006f01,
mRNA sequence
Length = 572
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 383 gggaagctattctttgcattttgggtcattg 353
>gb|DW016544.1|DW016544 EST1225505 MTY Medicago truncatula cDNA clone MTYAI54, mRNA
sequence
Length = 787
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 519 gggaagctattctttgcattttgggtcattg 549
>gb|AC131248.14| Medicago truncatula clone mth2-28n22, complete sequence
Length = 136333
Score = 46.1 bits (23), Expect = 0.002
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 126 gggaagctcttctttgcattttgggtgattg 156
|||||||| ||||||||||||||||| ||||
Sbjct: 99778 gggaagctattctttgcattttgggtcattg 99748
>gb|AW736522.1|AW736522 EST332536 KV3 Medicago truncatula cDNA clone pKV3-13H14, mRNA
sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 421 ttctttgcattttgggtgat 402
>gb|AW773746.1|AW773746 EST332732 KV3 Medicago truncatula cDNA clone pKV3-15B20, mRNA
sequence
Length = 538
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 504 ttctttgcattttgggtgat 485
>gb|AW776296.1|AW776296 EST335361 DSIL Medicago truncatula cDNA clone pDSIL-7K4, mRNA
sequence
Length = 511
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 121 ttctttgcattttgggtgat 140
>gb|BE320392.2|BE320392 NF030D08RT1F1062 Developing root Medicago truncatula cDNA clone
NF030D08RT 5', mRNA sequence
Length = 342
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 277 ttctttgcattttgggtgat 296
>gb|BG453782.1|BG453782 NF094A06LF1F1038 Developing leaf Medicago truncatula cDNA clone
NF094A06LF 5', mRNA sequence
Length = 639
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 108 ttctttgcattttgggtgat 127
>gb|DW018938.1|DW018938 EST1227899 MTY Medicago truncatula cDNA clone MTYBC76, mRNA
sequence
Length = 795
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 676 ttctttgcattttgggtgat 695
>gb|AC149572.14| Medicago truncatula clone mth2-116e22, complete sequence
Length = 120017
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 93652 ttctttgcattttgggtgat 93671
>emb|CT009508.6| M.truncatula DNA sequence from clone MTH2-76H16 on chromosome 3, complete
sequence
Length = 133910
Score = 40.1 bits (20), Expect = 0.097
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 135 ttctttgcattttgggtgat 154
||||||||||||||||||||
Sbjct: 129630 ttctttgcattttgggtgat 129649
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,932
Number of Sequences: 392609
Number of extensions: 58932
Number of successful extensions: 4610
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4588
Number of HSP's gapped (non-prelim): 22
length of query: 290
length of database: 441,732,993
effective HSP length: 19
effective length of query: 271
effective length of database: 434,273,422
effective search space: 117688097362
effective search space used: 117688097362
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)