BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= QAD15f02.sg.3.2
(2357 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC121244.13| Medicago truncatula clone mth2-31b9, comple... 60 9e-007
gb|BF633883.1|BF633883 NF072B01DT1F1011 Drought Medicago tr... 56 1e-005
gb|CX528324.1|CX528324 s13dNF54B10AT089_517160 Aphid-Infect... 56 1e-005
emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1... 52 2e-004
gb|CX527293.1|CX527293 s13dNF42A10AT081_515098 Aphid-Infect... 50 9e-004
gb|AC125480.33| Medicago truncatula clone mth2-8c24, comple... 50 9e-004
gb|CG951258.1|CG951258 MBELL57TR mth2 Medicago truncatula g... 46 0.014
gb|AC137669.12| Medicago truncatula clone mth2-27m3, comple... 46 0.014
gb|AW256715.1|AW256715 EST304852 KV2 Medicago truncatula cD... 44 0.054
gb|CX529675.1|CX529675 s13dNF50D09MJ075_245396 Methyl Jasmo... 44 0.054
gb|AL369236.1|AL369236 MtBA29G01F1 MtBA Medicago truncatula... 42 0.21
gb|AL372196.1|AL372196 MtBA49C05F1 MtBA Medicago truncatula... 42 0.21
gb|CX526278.1|CX526278 s13dNF34B08AT073_510300 Aphid-Infect... 42 0.21
gb|AC140722.11| Medicago truncatula clone mth2-14e20, compl... 42 0.21
>gb|AC121244.13| Medicago truncatula clone mth2-31b9, complete sequence
Length = 146189
Score = 60.0 bits (30), Expect = 9e-007
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 446 agcacgatgattatcacatgatgttaaggt 475
||||||||||||||||||||||||||||||
Sbjct: 76443 agcacgatgattatcacatgatgttaaggt 76414
Score = 46.1 bits (23), Expect = 0.014
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 625 catggagtagataaagagggaagacctgtatacatagaa 663
|||||||| ||||| || ||||||||||| |||||||||
Sbjct: 50415 catggagttgataaggatggaagacctgtttacatagaa 50453
Score = 44.1 bits (22), Expect = 0.054
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 446 agcacgatgattatcacatgatgttaaggt 475
|||||||||||||||| | |||||||||||
Sbjct: 70279 agcacgatgattatcataagatgttaaggt 70250
>gb|BF633883.1|BF633883 NF072B01DT1F1011 Drought Medicago truncatula cDNA clone NF072B01DT
5', mRNA sequence
Length = 603
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 817 attttggatgtgcaaggcgtgggtttcaagaacttc 852
||||||||||| ||||||||||||||||| ||||||
Sbjct: 475 attttggatgttcaaggcgtgggtttcaaaaacttc 510
Score = 42.1 bits (21), Expect = 0.21
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 621 ttatcatggagtagataaagagggaagacctgt 653
||||||||| || ||||| ||||||||||||||
Sbjct: 279 ttatcatggtgtggataaggagggaagacctgt 311
>gb|CX528324.1|CX528324 s13dNF54B10AT089_517160 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 617
Score = 56.0 bits (28), Expect = 1e-005
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 817 attttggatgtgcaaggcgtgggtttcaagaacttc 852
||||||||||| ||||||||||||||||| ||||||
Sbjct: 545 attttggatgttcaaggcgtgggtttcaaaaacttc 580
Score = 42.1 bits (21), Expect = 0.21
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 621 ttatcatggagtagataaagagggaagacctgt 653
||||||||| || ||||| ||||||||||||||
Sbjct: 349 ttatcatggtgtggataaggagggaagacctgt 381
>emb|CR955005.2| Medicago truncatula chromosome 5 clone mte1-58c24, COMPLETE SEQUENCE
Length = 106497
Score = 52.0 bits (26), Expect = 2e-004
Identities = 101/126 (80%)
Strand = Plus / Minus
Query: 623 atcatggagtagataaagagggaagacctgtatacatagaattagtaggaaaagttgatg 682
||||||| ||||||||||| ||| | ||||| || |||||| | ||||| |||| ||||
Sbjct: 83554 atcatggtgtagataaagaaggacggcctgtgtatatagaaagattaggacaagtcgatg 83495
Query: 683 caaacaagctaatacaagtgacaaccctagatcggtatgtaaaataccatgtcaaagaat 742
| | |||| | || ||||| |||||| | ||||| ||| | ||||||||||| || || |
Sbjct: 83494 cgaccaagatgatgcaagtcacaaccatggatcgctatatcaaataccatgtaaaggagt 83435
Query: 743 ttgaga 748
||||||
Sbjct: 83434 ttgaga 83429
Score = 46.1 bits (23), Expect = 0.014
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||| |||| ||| | ||| |||||||| |||||| | || ||||||||||
Sbjct: 83787 ggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggaggaagg 83728
Query: 548 aattcgg 554
|||||||
Sbjct: 83727 aattcgg 83721
>gb|CX527293.1|CX527293 s13dNF42A10AT081_515098 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 511
Score = 50.1 bits (25), Expect = 9e-004
Identities = 67/81 (82%)
Strand = Plus / Plus
Query: 451 gatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgagaaagct 510
|||||||| || ||||||||||| || || |||||| |||||||||| |||| |||||
Sbjct: 392 gatgattaccatatgatgttaagatttctgaaagcaaggaaatttgatattgaaaaagca 451
Query: 511 aagagtatgtggtcagacatg 531
||| ||||||| | ||||||
Sbjct: 452 aagcatatgtgggctgacatg 472
>gb|AC125480.33| Medicago truncatula clone mth2-8c24, complete sequence
Length = 119718
Score = 50.1 bits (25), Expect = 9e-004
Identities = 34/37 (91%)
Strand = Plus / Minus
Query: 712 gatcggtatgtaaaataccatgtcaaagaatttgaga 748
||||| ||||| |||||||||||||| ||||||||||
Sbjct: 86797 gatcgatatgtcaaataccatgtcaaggaatttgaga 86761
Score = 48.1 bits (24), Expect = 0.003
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 623 atcatggagtagataaagagggaagacc 650
||||||||||||||||||| ||||||||
Sbjct: 86886 atcatggagtagataaagaaggaagacc 86859
>gb|CG951258.1|CG951258 MBELL57TR mth2 Medicago truncatula genomic clone 80J18, DNA
sequence
Length = 791
Score = 46.1 bits (23), Expect = 0.014
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||| |||| ||| | ||| |||||||| |||||| | || ||||||||||
Sbjct: 116 ggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggaggaagg 57
Query: 548 aattcgg 554
|||||||
Sbjct: 56 aattcgg 50
>gb|AC137669.12| Medicago truncatula clone mth2-27m3, complete sequence
Length = 120323
Score = 46.1 bits (23), Expect = 0.014
Identities = 56/67 (83%)
Strand = Plus / Minus
Query: 488 ggaaatttgaagttgagaaagctaagagtatgtggtcagacatgatcaattggaggaagg 547
||||||||||| |||| ||| | ||| |||||||| |||||| | || ||||||||||
Sbjct: 117 ggaaatttgaaattgataaatcaaagctgatgtggtctgacatgctgaaatggaggaagg 58
Query: 548 aattcgg 554
|||||||
Sbjct: 57 aattcgg 51
>gb|AW256715.1|AW256715 EST304852 KV2 Medicago truncatula cDNA clone KV2-5H9, mRNA sequence
Length = 665
Score = 44.1 bits (22), Expect = 0.054
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 817 attttggatgtgcaaggcgtgggtttcaagaacttctc 854
||||||||||| || || ||||||||||| ||||||||
Sbjct: 470 attttggatgttcatggtgtgggtttcaaaaacttctc 507
Score = 42.1 bits (21), Expect = 0.21
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 621 ttatcatggagtagataaagagggaagacctgt 653
||||||||| || |||||||| |||||||||||
Sbjct: 274 ttatcatggtgttgataaagaaggaagacctgt 306
>gb|CX529675.1|CX529675 s13dNF50D09MJ075_245396 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.054
Identities = 85/106 (80%)
Strand = Plus / Plus
Query: 446 agcacgatgattatcacatgatgttaaggttcctaaaagcacggaaatttgaagttgaga 505
|||| ||||||||||| ||||| |||| || || |||||| |||| ||||| |||| |
Sbjct: 333 agcatgatgattatcatttgatgctaagatttcttaaagcaaggaagtttgatattgaaa 392
Query: 506 aagctaagagtatgtggtcagacatgatcaattggaggaaggaatt 551
|||| |||| ||||||| | || ||| | | ||||||||||||||
Sbjct: 393 aagcaaagaatatgtgggctgatatgctacaatggaggaaggaatt 438
>gb|AL369236.1|AL369236 MtBA29G01F1 MtBA Medicago truncatula cDNA clone MtBA29G01 T3, mRNA
sequence
Length = 478
Score = 42.1 bits (21), Expect = 0.21
Identities = 30/33 (90%)
Strand = Plus / Plus
Query: 621 ttatcatggagtagataaagagggaagacctgt 653
||||||||| || |||||||| |||||||||||
Sbjct: 422 ttatcatggtgttgataaagaaggaagacctgt 454
>gb|AL372196.1|AL372196 MtBA49C05F1 MtBA Medicago truncatula cDNA clone MtBA49C05 T3, mRNA
sequence
Length = 264
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 766 tttccagcttgcaccattgctgctaaaaagcacatagattc 806
||||| |||||||| |||||||| || | ||||||||||||
Sbjct: 73 tttcctgcttgcactattgctgcaaagaggcacatagattc 113
>gb|CX526278.1|CX526278 s13dNF34B08AT073_510300 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 644
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 766 tttccagcttgcaccattgctgctaaaaagcacatagattc 806
||||| |||||||| |||||||| || | ||||||||||||
Sbjct: 255 tttcctgcttgcactattgctgcaaagaggcacatagattc 295
>gb|AC140722.11| Medicago truncatula clone mth2-14e20, complete sequence
Length = 97982
Score = 42.1 bits (21), Expect = 0.21
Identities = 36/41 (87%)
Strand = Plus / Minus
Query: 766 tttccagcttgcaccattgctgctaaaaagcacatagattc 806
||||| |||||||| |||||||| || | ||||||||||||
Sbjct: 25735 tttcctgcttgcactattgctgcaaagaggcacatagattc 25695
Score = 42.1 bits (21), Expect = 0.21
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 814 actattttggatgtgcaaggcgtgg 838
|||||||||||||||||||| ||||
Sbjct: 17827 actattttggatgtgcaaggagtgg 17851
Score = 42.1 bits (21), Expect = 0.21
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 623 atcatggagtagataaagagggaagacctgtatacat 659
|||||||||| ||||| || ||||||||||| |||||
Sbjct: 17636 atcatggagttgataaggatggaagacctgtttacat 17672
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 655,629
Number of Sequences: 392609
Number of extensions: 655629
Number of successful extensions: 61446
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61307
Number of HSP's gapped (non-prelim): 138
length of query: 2357
length of database: 441,732,993
effective HSP length: 20
effective length of query: 2337
effective length of database: 433,880,813
effective search space: 1013979459981
effective search space used: 1013979459981
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)