BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MAD56_a5f4.3.2
         (1520 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR345157.1|  mte1-79E19FM1 BAC end, cultivar Jemalong A1...    44   0.034
emb|CR322783.1|  mte1-5E22FM1 BAC end, cultivar Jemalong A17...    44   0.034
gb|BI311530.1|BI311530  EST5313280 GESD Medicago truncatula ...    44   0.034
gb|CA917257.1|CA917257  EST641404 GPOD Medicago truncatula c...    44   0.034
gb|CA921829.1|CA921829  EST639547 MTUS Medicago truncatula c...    44   0.034

>emb|CR345157.1| mte1-79E19FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
            genomic survey sequence
          Length = 756

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1278 aatgatgatgatgatataaata 1299
            ||||||||||||||||||||||
Sbjct: 453  aatgatgatgatgatataaata 432



>emb|CR322783.1| mte1-5E22FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
            genomic survey sequence
          Length = 750

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1278 aatgatgatgatgatataaata 1299
            ||||||||||||||||||||||
Sbjct: 453  aatgatgatgatgatataaata 432



>gb|BI311530.1|BI311530 EST5313280 GESD Medicago truncatula cDNA clone pGESD13K5 5' end, mRNA
            sequence
          Length = 651

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 1278 aatgatgatgatgatataaata 1299
            ||||||||||||||||||||||
Sbjct: 622  aatgatgatgatgatataaata 643



>gb|CA917257.1|CA917257 EST641404 GPOD Medicago truncatula cDNA clone GPOD-35J9, mRNA
            sequence
          Length = 656

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1278 aatgatgatgatgatataaata 1299
            ||||||||||||||||||||||
Sbjct: 40   aatgatgatgatgatataaata 19



>gb|CA921829.1|CA921829 EST639547 MTUS Medicago truncatula cDNA clone MTUS-44H5, mRNA
            sequence
          Length = 804

 Score = 44.1 bits (22), Expect = 0.034
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                  
Query: 1278 aatgatgatgatgatataaata 1299
            ||||||||||||||||||||||
Sbjct: 28   aatgatgatgatgatataaata 7



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 313,967
Number of Sequences: 392609
Number of extensions: 313967
Number of successful extensions: 27393
Number of sequences better than  0.5: 5
Number of HSP's better than  0.5 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27388
Number of HSP's gapped (non-prelim): 5
length of query: 1520
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1500
effective length of database: 433,880,813
effective search space: 650821219500
effective search space used: 650821219500
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)