BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= M73028.2.1
(1802 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC145329.35| Medicago truncatula clone mth2-8i21, comple... 58 3e-006
gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower M... 56 1e-005
emb|CR970161.1| mth4-3L24FM1 BAC end, cultivar Jemalong A17... 48 0.003
gb|BF643814.1|BF643814 NF058A04EC1F1033 Elicited cell cultu... 48 0.003
gb|BI309968.1|BI309968 EST5311718 GESD Medicago truncatula ... 48 0.003
gb|AC144645.17| Medicago truncatula clone mth2-11e15, compl... 48 0.003
gb|AC148755.6| Medicago truncatula clone mth2-24n16, comple... 48 0.003
gb|AC174300.4| Medicago truncatula clone mth2-84c16, comple... 48 0.003
gb|BF649523.1|BF649523 NF080G02EC1F1019 Elicited cell cultu... 44 0.041
gb|CF068076.1|CF068076 EST668797 MTUS Medicago truncatula c... 44 0.041
gb|CX533785.1|CX533785 s13dNF0OD02MJ014_320852 Methyl Jasmo... 44 0.041
gb|AC171168.2| Medicago truncatula chromosome 2 clone mth2-... 44 0.041
gb|BI269981.1|BI269981 NF003D12FL1F1102 Developing flower M... 42 0.16
gb|BI271130.1|BI271130 NF005F07FL1F1063 Developing flower M... 42 0.16
gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-... 42 0.16
>gb|AC145329.35| Medicago truncatula clone mth2-8i21, complete sequence
Length = 123357
Score = 58.0 bits (29), Expect = 3e-006
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 580 caggtggtccctgatcgccagccacctccccggccgaacagacaacgagatcaagaacta 639
|||||||||| |||| || || ||| | || ||| |||||||||||||||| || |||||
Sbjct: 79579 caggtggtccttgattgcaagtcacttgccaggcagaacagacaacgagattaaaaacta 79638
Query: 640 ctggaactc 648
|||||||||
Sbjct: 79639 ctggaactc 79647
>gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower Medicago truncatula cDNA clone
NF068A05FL 5', mRNA sequence
Length = 523
Score = 56.0 bits (28), Expect = 1e-005
Identities = 40/44 (90%)
Strand = Plus / Minus
Query: 458 ctccggtgcggcaagagctgccggctccggtggatcaactacct 501
||||| ||||| ||||| ||||| ||||||||||||||||||||
Sbjct: 173 ctccgttgcggtaagagttgccgtctccggtggatcaactacct 130
>emb|CR970161.1| mth4-3L24FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 486
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
|||||||||| |||||||||||||| ||||||
Sbjct: 473 gaacagacaatgagatcaagaactattggaac 442
>gb|BF643814.1|BF643814 NF058A04EC1F1033 Elicited cell culture Medicago truncatula cDNA
clone NF058A04EC 5', mRNA sequence
Length = 545
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
|||||||||| |||||||||||||| ||||||
Sbjct: 284 gaacagacaatgagatcaagaactattggaac 315
>gb|BI309968.1|BI309968 EST5311718 GESD Medicago truncatula cDNA clone pGESD4N19 5' end,
mRNA sequence
Length = 759
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 614 cgaacagacaacgagatcaagaactactggaa 645
||||||||||| || |||||||||||||||||
Sbjct: 249 cgaacagacaatgaaatcaagaactactggaa 280
>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
Length = 124394
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 614 cgaacagacaacgagatcaagaactactggaa 645
||||||||||| || |||||||||||||||||
Sbjct: 54755 cgaacagacaatgaaatcaagaactactggaa 54724
>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence
Length = 119876
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
|||||||||| |||||||||||||| ||||||
Sbjct: 45783 gaacagacaatgagatcaagaactattggaac 45752
>gb|AC174300.4| Medicago truncatula clone mth2-84c16, complete sequence
Length = 139426
Score = 48.1 bits (24), Expect = 0.003
Identities = 30/32 (93%)
Strand = Plus / Minus
Query: 615 gaacagacaacgagatcaagaactactggaac 646
|||||||||| |||||||||||||| ||||||
Sbjct: 115013 gaacagacaatgagatcaagaactattggaac 114982
>gb|BF649523.1|BF649523 NF080G02EC1F1019 Elicited cell culture Medicago truncatula cDNA
clone NF080G02EC 5', mRNA sequence
Length = 588
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaa 636
||||||||||||||||||||||
Sbjct: 481 gaacagacaacgagatcaagaa 502
>gb|CF068076.1|CF068076 EST668797 MTUS Medicago truncatula cDNA clone MTUS-3D9, mRNA
sequence
Length = 516
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaa 636
||||||||||||||||||||||
Sbjct: 475 gaacagacaacgagatcaagaa 496
>gb|CX533785.1|CX533785 s13dNF0OD02MJ014_320852 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 629
Score = 44.1 bits (22), Expect = 0.041
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaa 636
||||||||||||||||||||||
Sbjct: 88 gaacagacaacgagatcaagaa 109
>gb|AC171168.2| Medicago truncatula chromosome 2 clone mth2-90o6, *** SEQUENCING IN
PROGRESS ***, 5 unordered pieces
Length = 140452
Score = 44.1 bits (22), Expect = 0.041
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactggaactcgcac 652
|||||||||| || || ||||||||||||||| |||||
Sbjct: 11690 gaacagacaatgaaataaagaactactggaacacgcac 11727
>gb|BI269981.1|BI269981 NF003D12FL1F1102 Developing flower Medicago truncatula cDNA clone
NF003D12FL 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactgg 643
||||||| |||||||| ||||||||||||
Sbjct: 393 gaacagataacgagataaagaactactgg 421
>gb|BI271130.1|BI271130 NF005F07FL1F1063 Developing flower Medicago truncatula cDNA clone
NF005F07FL 5', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactgg 643
||||||| |||||||| ||||||||||||
Sbjct: 293 gaacagataacgagataaagaactactgg 321
>gb|AC165430.2| Medicago truncatula chromosome 2 clone mth2-67a21, *** SEQUENCING IN
PROGRESS ***, 4 ordered pieces
Length = 114251
Score = 42.1 bits (21), Expect = 0.16
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 615 gaacagacaacgagatcaagaactactgg 643
||||||| |||||||| ||||||||||||
Sbjct: 98922 gaacagataacgagataaagaactactgg 98950
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 192,331
Number of Sequences: 392609
Number of extensions: 192331
Number of successful extensions: 14364
Number of sequences better than 0.5: 15
Number of HSP's better than 0.5 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14335
Number of HSP's gapped (non-prelim): 29
length of query: 1802
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1782
effective length of database: 433,880,813
effective search space: 773175608766
effective search space used: 773175608766
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)