BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= L18925.2.1
(1221 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CX539597.1|CX539597 s13dNF65G09GS068_462456 Germinating ... 60 5e-007
gb|BI311053.1|BI311053 EST5312803 GESD Medicago truncatula ... 46 0.007
gb|CA857928.1|CA857928 EST635183 GLSD Medicago truncatula c... 46 0.007
gb|CX539289.1|CX539289 s13dNF64C07GS050_461838 Germinating ... 46 0.007
gb|AC137837.3| Medicago truncatula clone mth2-30e7, complet... 44 0.028
gb|AC153460.18| Medicago truncatula clone mth2-76i7, WORKIN... 44 0.028
gb|BI272502.1|BI272502 NF023F04FL1F1042 Developing flower M... 40 0.43
gb|BI272847.1|BI272847 NF097G09FL1F1071 Developing flower M... 40 0.43
gb|BI310910.1|BI310910 EST5312660 GESD Medicago truncatula ... 40 0.43
gb|BI311095.1|BI311095 EST5312845 GESD Medicago truncatula ... 40 0.43
gb|BQ122320.1|BQ122320 EST607896 GLSD Medicago truncatula c... 40 0.43
gb|BQ122353.1|BQ122353 EST607929 GLSD Medicago truncatula c... 40 0.43
gb|BQ123247.1|BQ123247 EST608823 GLSD Medicago truncatula c... 40 0.43
gb|CA989281.1|CA989281 EST642789 GLSD Medicago truncatula c... 40 0.43
gb|CB066648.1|CB066648 EST645271 GPOD Medicago truncatula c... 40 0.43
gb|CF068920.1|CF068920 EST669641 MTUS Medicago truncatula c... 40 0.43
gb|CX538782.1|CX538782 s13dNF0AD10GS078_460818 Germinating ... 40 0.43
gb|CX539737.1|CX539737 s13dNF67E12GS087_462746 Germinating ... 40 0.43
gb|CX542151.1|CX542151 s13dNF85H04GS044_467610 Germinating ... 40 0.43
gb|DW017511.1|DW017511 EST1226472 MTY Medicago truncatula c... 40 0.43
>gb|CX539597.1|CX539597 s13dNF65G09GS068_462456 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 600
Score = 60.0 bits (30), Expect = 5e-007
Identities = 45/50 (90%)
Strand = Plus / Minus
Query: 917 ttgacactgttgttggcatactcgtagaggcgaccacggctagagaagac 966
||||||||||| || |||||||| ||||| || |||||||||||||||||
Sbjct: 354 ttgacactgttattagcatactcatagagccgtccacggctagagaagac 305
>gb|BI311053.1|BI311053 EST5312803 GESD Medicago truncatula cDNA clone pGESD9F6 5' end,
mRNA sequence
Length = 754
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 766 caagtgcctgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttg 825
|||||||||||||| |||||||||||||| || || | | ||| ||||| ||||||||
Sbjct: 357 caagtgcctgttagaattttgcagcatctgtatttgttgtctcagctttgcagattcttg 298
Query: 826 ctg 828
|||
Sbjct: 297 ctg 295
>gb|CA857928.1|CA857928 EST635183 GLSD Medicago truncatula cDNA clone pGLSD-26B15, mRNA
sequence
Length = 858
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 766 caagtgcctgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttg 825
|||||||||||||| |||||||||||||| || || | | ||| ||||| ||||||||
Sbjct: 362 caagtgcctgttagaattttgcagcatctgtatttgttgtctcagctttgcagattcttg 303
Query: 826 ctg 828
|||
Sbjct: 302 ctg 300
>gb|CX539289.1|CX539289 s13dNF64C07GS050_461838 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 561
Score = 46.1 bits (23), Expect = 0.007
Identities = 53/63 (84%)
Strand = Plus / Minus
Query: 766 caagtgcctgttagtgttttgcagcatctggatctggttgcgcagttttgctgattcttg 825
|||||||||||||| |||||||||||||| || || | | ||| ||||| ||||||||
Sbjct: 395 caagtgcctgttagaattttgcagcatctgtatttgttgtctcagctttgcagattcttg 336
Query: 826 ctg 828
|||
Sbjct: 335 ctg 333
>gb|AC137837.3| Medicago truncatula clone mth2-30e7, complete sequence
Length = 79015
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1065 tgttctcgatcctcttgatctcaatc 1090
||||||| ||||||||||||||||||
Sbjct: 37555 tgttctcaatcctcttgatctcaatc 37580
>gb|AC153460.18| Medicago truncatula clone mth2-76i7, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 127968
Score = 44.1 bits (22), Expect = 0.028
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 1065 tgttctcgatcctcttgatctcaatc 1090
||||||| ||||||||||||||||||
Sbjct: 82392 tgttctcaatcctcttgatctcaatc 82367
>gb|BI272502.1|BI272502 NF023F04FL1F1042 Developing flower Medicago truncatula cDNA clone
NF023F04FL 5', mRNA sequence
Length = 429
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 236 acactgttgttggcatactc 217
>gb|BI272847.1|BI272847 NF097G09FL1F1071 Developing flower Medicago truncatula cDNA clone
NF097G09FL 5', mRNA sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 235 acactgttgttggcatactc 216
>gb|BI310910.1|BI310910 EST5312660 GESD Medicago truncatula cDNA clone pGESD9K22 5' end,
mRNA sequence
Length = 754
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 169 acactgttgttggcatactc 150
>gb|BI311095.1|BI311095 EST5312845 GESD Medicago truncatula cDNA clone pGESD9N6 5' end,
mRNA sequence
Length = 748
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 273 acactgttgttggcatactc 254
>gb|BQ122320.1|BQ122320 EST607896 GLSD Medicago truncatula cDNA clone pGLSD-28J17, mRNA
sequence
Length = 477
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 256 acactgttgttggcatactc 237
>gb|BQ122353.1|BQ122353 EST607929 GLSD Medicago truncatula cDNA clone pGLSD-28B6, mRNA
sequence
Length = 325
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 243 acactgttgttggcatactc 224
>gb|BQ123247.1|BQ123247 EST608823 GLSD Medicago truncatula cDNA clone pGLSD-31F11, mRNA
sequence
Length = 636
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 185 acactgttgttggcatactc 166
>gb|CA989281.1|CA989281 EST642789 GLSD Medicago truncatula cDNA clone pGLSD-41E3, mRNA
sequence
Length = 574
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 121 acactgttgttggcatactc 102
>gb|CB066648.1|CB066648 EST645271 GPOD Medicago truncatula cDNA clone GPOD-34Z50, mRNA
sequence
Length = 729
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 209 acactgttgttggcatactc 190
>gb|CF068920.1|CF068920 EST669641 MTUS Medicago truncatula cDNA clone MTUS-14A10, mRNA
sequence
Length = 849
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 251 acactgttgttggcatactc 232
>gb|CX538782.1|CX538782 s13dNF0AD10GS078_460818 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 466
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 284 acactgttgttggcatactc 265
>gb|CX539737.1|CX539737 s13dNF67E12GS087_462746 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 632
Score = 40.1 bits (20), Expect = 0.43
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 920 acactgttgttggcatactc 939
||||||||||||||||||||
Sbjct: 500 acactgttgttggcatactc 481
>gb|CX542151.1|CX542151 s13dNF85H04GS044_467610 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 619
Score = 40.1 bits (20), Expect = 0.43
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1073 atcctcttgatctcaatccttcctctacccat 1104
|||||||||||||||||| | ||||| |||||
Sbjct: 55 atcctcttgatctcaatcttacctcttcccat 24
>gb|DW017511.1|DW017511 EST1226472 MTY Medicago truncatula cDNA clone MTYAU56, mRNA sequence
Length = 853
Score = 40.1 bits (20), Expect = 0.43
Identities = 29/32 (90%)
Strand = Plus / Minus
Query: 1073 atcctcttgatctcaatccttcctctacccat 1104
|||||||||||||||||| | ||||| |||||
Sbjct: 88 atcctcttgatctcaatcttacctcttcccat 57
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 228,441
Number of Sequences: 392609
Number of extensions: 228441
Number of successful extensions: 19315
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19257
Number of HSP's gapped (non-prelim): 55
length of query: 1221
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1201
effective length of database: 433,880,813
effective search space: 521090856413
effective search space used: 521090856413
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)