BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= CCR2
(1466 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF650001.1|BF650001 NF083E10EC1F1081 Elicited cell cultu... 50 5e-004
gb|BF647459.1|BF647459 NF009D05EC1F1044 Elicited cell cultu... 44 0.033
gb|AW685228.1|AW685228 NF027D06NR1F1000 Nodulated root Medi... 42 0.13
gb|AW694294.1|AW694294 NF074E11ST1F1086 Developing stem Med... 42 0.13
gb|BE124053.1|BE124053 EST394178 DSIL Medicago truncatula c... 42 0.13
gb|BF520361.1|BF520361 EST457831 DSIL Medicago truncatula c... 42 0.13
gb|BF635010.1|BF635010 NF077D12DT1F1101 Drought Medicago tr... 42 0.13
gb|BF644380.1|BF644380 NF061B04EC1F1032 Elicited cell cultu... 42 0.13
gb|BF644408.1|BF644408 NF061H04EC1F1043 Elicited cell cultu... 42 0.13
gb|BF644987.1|BF644987 NF018D06EC1F1057 Elicited cell cultu... 42 0.13
gb|BF645933.1|BF645933 NF043E08EC1F1066 Elicited cell cultu... 42 0.13
gb|BF647404.1|BF647404 NF040C08EC1F1065 Elicited cell cultu... 42 0.13
gb|BF648496.1|BF648496 NF046G12EC1F1099 Elicited cell cultu... 42 0.13
gb|BF648868.1|BF648868 NF052C08EC1F1056 Elicited cell cultu... 42 0.13
gb|BF649603.1|BF649603 NF080E06EC1F1050 Elicited cell cultu... 42 0.13
gb|BG448173.1|BG448173 NF106F05EC1F1045 Elicited cell cultu... 42 0.13
gb|BG582735.1|BG582735 EST484481 GVN Medicago truncatula cD... 42 0.13
gb|BG582898.1|BG582898 EST484644 GVN Medicago truncatula cD... 42 0.13
gb|BG583764.1|BG583764 EST485519 GVN Medicago truncatula cD... 42 0.13
gb|BQ146460.1|BQ146460 NF084C06FL1F1050 Developing flower M... 42 0.13
gb|BQ165455.1|BQ165455 EST611324 KVKC Medicago truncatula c... 42 0.13
gb|CB895205.1|CB895205 EST647997 HOGA Medicago truncatula c... 42 0.13
gb|CF069666.1|CF069666 EST670387 MTUS Medicago truncatula c... 42 0.13
gb|CX534984.1|CX534984 s13dNF28A03MJ021_388151 Methyl Jasmo... 42 0.13
emb|CR315875.1| mte1-4D19RM1 BAC end, cultivar Jemalong A17... 40 0.52
gb|AW560470.1|AW560470 EST315518 DSIR Medicago truncatula c... 40 0.52
gb|BF520859.1|BF520859 EST458332 DSIL Medicago truncatula c... 40 0.52
gb|BF646035.1|BF646035 NF043F04EC1F1042 Elicited cell cultu... 40 0.52
gb|AC141112.7| Medicago truncatula clone mth2-15m12, comple... 40 0.52
emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-7... 40 0.52
gb|CG934741.1|CG934741 MBEDF82TRC mth2 Medicago truncatula ... 38 2.0
emb|CR509425.1| mth4-20H9FM1 BAC end, cultivar Jemalong A17... 38 2.0
emb|CR513117.1| mth4-42C7RM2 BAC end, cultivar Jemalong A17... 38 2.0
emb|CR966878.1| mth4-38L17FM1 BAC end, cultivar Jemalong A1... 38 2.0
gb|AW686489.1|AW686489 NF038F03NR1F1000 Nodulated root Medi... 38 2.0
gb|CG927251.1|CG927251 MBEBC89TR mth2 Medicago truncatula g... 36 8.1
emb|CR300053.1| mte1-18M23FM1 BAC end, cultivar Jemalong A1... 36 8.1
gb|BE123990.1|BE123990 EST394115 DSIL Medicago truncatula c... 36 8.1
gb|BE239909.1|BE239909 EST403958 MHRP- Medicago truncatula ... 36 8.1
gb|BE239911.1|BE239911 EST403960 MHRP- Medicago truncatula ... 36 8.1
gb|BE997470.1|BE997470 EST429193 GVSN Medicago truncatula c... 36 8.1
gb|BF644616.1|BF644616 NF017G05EC1F1039 Elicited cell cultu... 36 8.1
gb|BF649330.1|BF649330 NF056B04EC1F1031 Elicited cell cultu... 36 8.1
gb|BF651128.1|BF651128 NF101A12EC1F1087 Elicited cell cultu... 36 8.1
gb|BG588065.1|BG588065 EST489874 MHRP- Medicago truncatula ... 36 8.1
gb|BI270261.1|BI270261 NF008G07FL1F1056 Developing flower M... 36 8.1
gb|BQ124825.1|BQ124825 EST610401 GLSD Medicago truncatula c... 36 8.1
gb|BQ124855.1|BQ124855 EST610431 GLSD Medicago truncatula c... 36 8.1
gb|CB891933.1|CB891933 EST648902 KV3 Medicago truncatula cD... 36 8.1
gb|CA920266.1|CA920266 EST637984 MTUS Medicago truncatula c... 36 8.1
gb|CF069871.1|CF069871 EST670592 MTUS Medicago truncatula c... 36 8.1
gb|CX530287.1|CX530287 s13dNF54G10MJ081_246608 Methyl Jasmo... 36 8.1
gb|CX531991.1|CX531991 s13dNF62C07MJ050_270290 Methyl Jasmo... 36 8.1
gb|CX539130.1|CX539130 s13dNF60D11GS090_461520 Germinating ... 36 8.1
gb|CX542201.1|CX542201 s13dNF86E03GS019_467710 Germinating ... 36 8.1
gb|DW018141.1|DW018141 EST1227102 MTY Medicago truncatula c... 36 8.1
gb|AC169178.1| Medicago truncatula chromosome 7 clone mth2-... 36 8.1
gb|AC135566.33| Medicago truncatula clone mth2-22g8, WORKIN... 36 8.1
>gb|BF650001.1|BF650001 NF083E10EC1F1081 Elicited cell culture Medicago truncatula cDNA
clone NF083E10EC 5', mRNA sequence
Length = 617
Score = 50.1 bits (25), Expect = 5e-004
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||||||||||||||
Sbjct: 557 attgcaagaacacccagaactggta 581
>gb|BF647459.1|BF647459 NF009D05EC1F1044 Elicited cell culture Medicago truncatula cDNA
clone NF009D05EC 5', mRNA sequence
Length = 644
Score = 44.1 bits (22), Expect = 0.033
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 593 attgcaagaacaccnagaactggta 617
>gb|AW685228.1|AW685228 NF027D06NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF027D06NR 5', mRNA sequence
Length = 653
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 586 attgcaagaacaccaagaactggta 610
>gb|AW694294.1|AW694294 NF074E11ST1F1086 Developing stem Medicago truncatula cDNA clone
NF074E11ST 5', mRNA sequence
Length = 663
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 590 attgcaagaacaccaagaactggta 614
>gb|BE124053.1|BE124053 EST394178 DSIL Medicago truncatula cDNA clone pDSIL-12E14, mRNA
sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 492 attgcaagaacaccaagaactggta 516
>gb|BF520361.1|BF520361 EST457831 DSIL Medicago truncatula cDNA clone pDSIL-23K16, mRNA
sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 441 attgcaagaacaccaagaactggta 465
>gb|BF635010.1|BF635010 NF077D12DT1F1101 Drought Medicago truncatula cDNA clone NF077D12DT
5', mRNA sequence
Length = 687
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 589 attgcaagaacaccaagaactggta 613
>gb|BF644380.1|BF644380 NF061B04EC1F1032 Elicited cell culture Medicago truncatula cDNA
clone NF061B04EC 5', mRNA sequence
Length = 482
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 216 attgcaagaacaccaagaactggta 240
>gb|BF644408.1|BF644408 NF061H04EC1F1043 Elicited cell culture Medicago truncatula cDNA
clone NF061H04EC 5', mRNA sequence
Length = 615
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 589 attgcaagaacaccaagaactggta 613
>gb|BF644987.1|BF644987 NF018D06EC1F1057 Elicited cell culture Medicago truncatula cDNA
clone NF018D06EC 5', mRNA sequence
Length = 694
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 593 attgcaagaacaccaagaactggta 617
>gb|BF645933.1|BF645933 NF043E08EC1F1066 Elicited cell culture Medicago truncatula cDNA
clone NF043E08EC 5', mRNA sequence
Length = 633
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 557 attgcaagaacaccaagaactggta 581
>gb|BF647404.1|BF647404 NF040C08EC1F1065 Elicited cell culture Medicago truncatula cDNA
clone NF040C08EC 5', mRNA sequence
Length = 670
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 558 attgcaagaacaccaagaactggta 582
>gb|BF648496.1|BF648496 NF046G12EC1F1099 Elicited cell culture Medicago truncatula cDNA
clone NF046G12EC 5', mRNA sequence
Length = 654
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 163 attgcaagaacaccaagaactggta 187
>gb|BF648868.1|BF648868 NF052C08EC1F1056 Elicited cell culture Medicago truncatula cDNA
clone NF052C08EC 5', mRNA sequence
Length = 676
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 528 attgcaagaacaccaagaactggta 552
>gb|BF649603.1|BF649603 NF080E06EC1F1050 Elicited cell culture Medicago truncatula cDNA
clone NF080E06EC 5', mRNA sequence
Length = 645
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 589 attgcaagaacaccaagaactggta 613
>gb|BG448173.1|BG448173 NF106F05EC1F1045 Elicited cell culture Medicago truncatula cDNA
clone NF106F05EC 5', mRNA sequence
Length = 647
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 585 attgcaagaacaccaagaactggta 609
>gb|BG582735.1|BG582735 EST484481 GVN Medicago truncatula cDNA clone pGVN-70F11 5' end,
mRNA sequence
Length = 814
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 627 attgcaagaacaccaagaactggta 651
>gb|BG582898.1|BG582898 EST484644 GVN Medicago truncatula cDNA clone pGVN-71C23 5' end,
mRNA sequence
Length = 720
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 492 attgcaagaacaccaagaactggta 516
>gb|BG583764.1|BG583764 EST485519 GVN Medicago truncatula cDNA clone pGVN-74M18 5' end,
mRNA sequence
Length = 728
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 493 attgcaagaacaccaagaactggta 517
>gb|BQ146460.1|BQ146460 NF084C06FL1F1050 Developing flower Medicago truncatula cDNA clone
NF084C06FL 5', mRNA sequence
Length = 652
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 586 attgcaagaacaccaagaactggta 610
>gb|BQ165455.1|BQ165455 EST611324 KVKC Medicago truncatula cDNA clone pKVKC-9C10, mRNA
sequence
Length = 706
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 492 attgcaagaacaccaagaactggta 516
>gb|CB895205.1|CB895205 EST647997 HOGA Medicago truncatula cDNA clone HOGA-33L22, mRNA
sequence
Length = 432
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 118 attgcaagaacaccaagaactggta 142
>gb|CF069666.1|CF069666 EST670387 MTUS Medicago truncatula cDNA clone MTUS-22H11, mRNA
sequence
Length = 691
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 592 attgcaagaacaccaagaactggta 616
>gb|CX534984.1|CX534984 s13dNF28A03MJ021_388151 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 626
Score = 42.1 bits (21), Expect = 0.13
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggta 625
|||||||||||||| ||||||||||
Sbjct: 401 attgcaagaacaccaagaactggta 425
>emb|CR315875.1| mte1-4D19RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 603
Score = 40.1 bits (20), Expect = 0.52
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1149 aatcatgatcatattcatat 1168
||||||||||||||||||||
Sbjct: 374 aatcatgatcatattcatat 393
>gb|AW560470.1|AW560470 EST315518 DSIR Medicago truncatula cDNA clone pDSIR-27O15, mRNA
sequence
Length = 549
Score = 40.1 bits (20), Expect = 0.52
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactggt 624
|||||||||||||| |||||||||
Sbjct: 526 attgcaagaacaccaagaactggt 549
>gb|BF520859.1|BF520859 EST458332 DSIL Medicago truncatula cDNA clone pDSIL-39J21, mRNA
sequence
Length = 555
Score = 40.1 bits (20), Expect = 0.52
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 277 tggatccaaagaacgaccac 296
||||||||||||||||||||
Sbjct: 205 tggatccaaagaacgaccac 224
>gb|BF646035.1|BF646035 NF043F04EC1F1042 Elicited cell culture Medicago truncatula cDNA
clone NF043F04EC 5', mRNA sequence
Length = 641
Score = 40.1 bits (20), Expect = 0.52
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 602 ttgcaagaacacccagaactggta 625
||||||||||||| ||||||||||
Sbjct: 593 ttgcaagaacaccaagaactggta 616
>gb|AC141112.7| Medicago truncatula clone mth2-15m12, complete sequence
Length = 135248
Score = 40.1 bits (20), Expect = 0.52
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1149 aatcatgatcatattcatat 1168
||||||||||||||||||||
Sbjct: 129773 aatcatgatcatattcatat 129754
>emb|CT009488.4| M.truncatula DNA sequence from clone MTH2-70J8 on chromosome 3,
complete sequence
Length = 119377
Score = 40.1 bits (20), Expect = 0.52
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1149 aatcatgatcatattcatat 1168
||||||||||||||||||||
Sbjct: 35177 aatcatgatcatattcatat 35158
>gb|CG934741.1|CG934741 MBEDF82TRC mth2 Medicago truncatula genomic clone 31M20, DNA
sequence
Length = 869
Score = 38.2 bits (19), Expect = 2.0
Identities = 25/27 (92%)
Strand = Plus / Minus
Query: 614 ccagaactggtactgctacgccaagac 640
||||||||||||||| || ||||||||
Sbjct: 657 ccagaactggtactgttatgccaagac 631
>emb|CR509425.1| mth4-20H9FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 466
Score = 38.2 bits (19), Expect = 2.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 614 ccagaactggtactgctacgccaagac 640
||||||||||||||| || ||||||||
Sbjct: 22 ccagaactggtactgttatgccaagac 48
>emb|CR513117.1| mth4-42C7RM2 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 718
Score = 38.2 bits (19), Expect = 2.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 614 ccagaactggtactgctacgccaagac 640
||||||||||||||| || ||||||||
Sbjct: 315 ccagaactggtactgttatgccaagac 341
>emb|CR966878.1| mth4-38L17FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 617
Score = 38.2 bits (19), Expect = 2.0
Identities = 25/27 (92%)
Strand = Plus / Plus
Query: 614 ccagaactggtactgctacgccaagac 640
||||||||||||||| || ||||||||
Sbjct: 376 ccagaactggtactgttatgccaagac 402
>gb|AW686489.1|AW686489 NF038F03NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF038F03NR 5', mRNA sequence
Length = 660
Score = 38.2 bits (19), Expect = 2.0
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactgg 623
|||||||||||||| ||||||||
Sbjct: 585 attgcaagaacaccaagaactgg 607
>gb|CG927251.1|CG927251 MBEBC89TR mth2 Medicago truncatula genomic clone 17P9, DNA sequence
Length = 839
Score = 36.2 bits (18), Expect = 8.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1153 atgatcatattcatatcc 1170
||||||||||||||||||
Sbjct: 720 atgatcatattcatatcc 737
>emb|CR300053.1| mte1-18M23FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 764
Score = 36.2 bits (18), Expect = 8.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1153 atgatcatattcatatcc 1170
||||||||||||||||||
Sbjct: 747 atgatcatattcatatcc 764
>gb|BE123990.1|BE123990 EST394115 DSIL Medicago truncatula cDNA clone pDSIL-11J8, mRNA
sequence
Length = 595
Score = 36.2 bits (18), Expect = 8.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1120 gacaaaacaagaccatgaccaa 1141
||||||||||||||| ||||||
Sbjct: 581 gacaaaacaagaccaagaccaa 560
>gb|BE239909.1|BE239909 EST403958 MHRP- Medicago truncatula cDNA clone pMHRP-41A9, mRNA
sequence
Length = 439
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 364 cagaactggtactgttatgccaagac 389
>gb|BE239911.1|BE239911 EST403960 MHRP- Medicago truncatula cDNA clone pMHRP-41A21, mRNA
sequence
Length = 286
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 126 cagaactggtactgttatgccaagac 151
>gb|BE997470.1|BE997470 EST429193 GVSN Medicago truncatula cDNA clone pGVSN-1O21, mRNA
sequence
Length = 807
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 555 cagaactggtactgttatgccaagac 580
>gb|BF644616.1|BF644616 NF017G05EC1F1039 Elicited cell culture Medicago truncatula cDNA
clone NF017G05EC 5', mRNA sequence
Length = 678
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 541 cagaactggtactgttatgccaagac 566
>gb|BF649330.1|BF649330 NF056B04EC1F1031 Elicited cell culture Medicago truncatula cDNA
clone NF056B04EC 5', mRNA sequence
Length = 663
Score = 36.2 bits (18), Expect = 8.1
Identities = 21/22 (95%)
Strand = Plus / Plus
Query: 601 attgcaagaacacccagaactg 622
|||||||||||||| |||||||
Sbjct: 589 attgcaagaacaccaagaactg 610
>gb|BF651128.1|BF651128 NF101A12EC1F1087 Elicited cell culture Medicago truncatula cDNA
clone NF101A12EC 5', mRNA sequence
Length = 655
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 507 cagaactggtactgttatgccaagac 532
>gb|BG588065.1|BG588065 EST489874 MHRP- Medicago truncatula cDNA clone pMHRP-41C7, mRNA
sequence
Length = 652
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 361 cagaactggtactgttatgccaagac 386
>gb|BI270261.1|BI270261 NF008G07FL1F1056 Developing flower Medicago truncatula cDNA clone
NF008G07FL 5', mRNA sequence
Length = 663
Score = 36.2 bits (18), Expect = 8.1
Identities = 18/18 (100%)
Strand = Plus / Minus
Query: 1121 acaaaacaagaccatgac 1138
||||||||||||||||||
Sbjct: 278 acaaaacaagaccatgac 261
>gb|BQ124825.1|BQ124825 EST610401 GLSD Medicago truncatula cDNA clone pGLSD-37I4, mRNA
sequence
Length = 643
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 412 cagaactggtactgttatgccaagac 437
>gb|BQ124855.1|BQ124855 EST610431 GLSD Medicago truncatula cDNA clone pGLSD-37M22, mRNA
sequence
Length = 693
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 406 cagaactggtactgttatgccaagac 431
>gb|CB891933.1|CB891933 EST648902 KV3 Medicago truncatula cDNA clone KV3-52J19, mRNA
sequence
Length = 798
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 536 cagaactggtactgttatgccaagac 561
>gb|CA920266.1|CA920266 EST637984 MTUS Medicago truncatula cDNA clone MTUS-25C6, mRNA
sequence
Length = 710
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Minus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 657 cagaactggtactgttatgccaagac 632
>gb|CF069871.1|CF069871 EST670592 MTUS Medicago truncatula cDNA clone MTUS-25C6, mRNA
sequence
Length = 786
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 533 cagaactggtactgttatgccaagac 558
>gb|CX530287.1|CX530287 s13dNF54G10MJ081_246608 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 604
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 486 cagaactggtactgttatgccaagac 511
>gb|CX531991.1|CX531991 s13dNF62C07MJ050_270290 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 650
Score = 36.2 bits (18), Expect = 8.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1120 gacaaaacaagaccatgaccaa 1141
||||||||||||||| ||||||
Sbjct: 327 gacaaaacaagaccaagaccaa 306
>gb|CX539130.1|CX539130 s13dNF60D11GS090_461520 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 604
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 505 cagaactggtactgttatgccaagac 530
>gb|CX542201.1|CX542201 s13dNF86E03GS019_467710 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 340
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 44 cagaactggtactgttatgccaagac 69
>gb|DW018141.1|DW018141 EST1227102 MTY Medicago truncatula cDNA clone MTYB278, mRNA
sequence
Length = 857
Score = 36.2 bits (18), Expect = 8.1
Identities = 24/26 (92%)
Strand = Plus / Plus
Query: 615 cagaactggtactgctacgccaagac 640
|||||||||||||| || ||||||||
Sbjct: 597 cagaactggtactgttatgccaagac 622
>gb|AC169178.1| Medicago truncatula chromosome 7 clone mth2-2o21, *** SEQUENCING IN
PROGRESS ***, 2 ordered pieces
Length = 97668
Score = 36.2 bits (18), Expect = 8.1
Identities = 18/18 (100%)
Strand = Plus / Plus
Query: 1151 tcatgatcatattcatat 1168
||||||||||||||||||
Sbjct: 43366 tcatgatcatattcatat 43383
>gb|AC135566.33| Medicago truncatula clone mth2-22g8, WORKING DRAFT SEQUENCE, 3 ordered
pieces
Length = 115222
Score = 36.2 bits (18), Expect = 8.1
Identities = 21/22 (95%)
Strand = Plus / Minus
Query: 1305 acaattaaatggcaactctaat 1326
||||||||||||||||| ||||
Sbjct: 96367 acaattaaatggcaactttaat 96346
Database: Mt_nucl_with_EST.fasta
Posted date: May 2, 2006 2:46 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 150,650
Number of Sequences: 392609
Number of extensions: 150650
Number of successful extensions: 11856
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 59
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 11777
Number of HSP's gapped (non-prelim): 79
length of query: 1466
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1446
effective length of database: 433,880,813
effective search space: 627391655598
effective search space used: 627391655598
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)