BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= AB021175.2.1
(1225 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG936995.1|CG936995 MBEKD56TRB mth2 Medicago truncatula ... 40 0.43
gb|CG937177.1|CG937177 MBEFT44TR mth2 Medicago truncatula g... 40 0.43
gb|AL381635.1|AL381635 MtBC02B01R3 MtBC Medicago truncatula... 40 0.43
gb|BF519158.1|BF519158 EST456619 DSIL Medicago truncatula c... 40 0.43
gb|CF068155.1|CF068155 EST668876 MTUS Medicago truncatula c... 40 0.43
gb|AC152551.33| Medicago truncatula clone mth2-24d6, comple... 40 0.43
>gb|CG936995.1|CG936995 MBEKD56TRB mth2 Medicago truncatula genomic clone 72J16, DNA
sequence
Length = 869
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 766 caccaacatgaagagcaacaagac 789
>gb|CG937177.1|CG937177 MBEFT44TR mth2 Medicago truncatula genomic clone 46H16, DNA
sequence
Length = 864
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 766 caccaacatgaagagcaacaagac 789
>gb|AL381635.1|AL381635 MtBC02B01R3 MtBC Medicago truncatula cDNA clone MtBC02B01 T7, mRNA
sequence
Length = 548
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 310 caccaacatgaagagcaacaagac 287
>gb|BF519158.1|BF519158 EST456619 DSIL Medicago truncatula cDNA clone pDSIL-19J10, mRNA
sequence
Length = 648
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 507 caccaacatgaagagcaacaagac 484
>gb|CF068155.1|CF068155 EST668876 MTUS Medicago truncatula cDNA clone MTUS-4E7, mRNA
sequence
Length = 695
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 468 caccaacatgaagagcaacaagac 445
>gb|AC152551.33| Medicago truncatula clone mth2-24d6, complete sequence
Length = 115154
Score = 40.1 bits (20), Expect = 0.43
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 201 caccaacatcaagagcaacaagac 224
||||||||| ||||||||||||||
Sbjct: 81422 caccaacatgaagagcaacaagac 81399
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 177,833
Number of Sequences: 392609
Number of extensions: 177833
Number of successful extensions: 14874
Number of sequences better than 0.5: 6
Number of HSP's better than 0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14866
Number of HSP's gapped (non-prelim): 8
length of query: 1225
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1205
effective length of database: 433,880,813
effective search space: 522826379665
effective search space used: 522826379665
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)