BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 9196052.2.1
         (771 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC146777.27|  Medicago truncatula clone mth2-173c10, comp...    40   0.27 
gb|AC149131.3|  Medicago truncatula chromosome 7 BAC clone m...    38   1.1  
gb|AC155894.4|  Medicago truncatula chromosome 7 clone mth2-...    38   1.1  
gb|BG455121.1|BG455121  NF096D06PL1F1048 Phosphate starved l...    36   4.2  
gb|BI271474.1|BI271474  NF057H04FL1F1044 Developing flower M...    36   4.2  
gb|BQ147956.1|BQ147956  NF049B03FL1F1028 Developing flower M...    36   4.2  
gb|CA917820.1|CA917820  EST641967 GPOD Medicago truncatula c...    36   4.2  
gb|CA917830.1|CA917830  EST641977 GPOD Medicago truncatula c...    36   4.2  

>gb|AC146777.27| Medicago truncatula clone mth2-173c10, complete sequence
          Length = 121026

 Score = 40.1 bits (20), Expect = 0.27
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 166   aaaggagctaagctactagg 185
             ||||||||||||||||||||
Sbjct: 85635 aaaggagctaagctactagg 85654



>gb|AC149131.3| Medicago truncatula chromosome 7 BAC clone mth2-19e15, complete
            sequence
          Length = 122492

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 149  gagtacaaacaaatggaaa 167
            |||||||||||||||||||
Sbjct: 1372 gagtacaaacaaatggaaa 1390



>gb|AC155894.4| Medicago truncatula chromosome 7 clone mth2-67b7, *** SEQUENCING IN
             PROGRESS ***, 3 ordered pieces
          Length = 125354

 Score = 38.2 bits (19), Expect = 1.1
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                
Query: 149   gagtacaaacaaatggaaa 167
             |||||||||||||||||||
Sbjct: 12744 gagtacaaacaaatggaaa 12726



>gb|BG455121.1|BG455121 NF096D06PL1F1048 Phosphate starved leaf Medicago truncatula cDNA
           clone NF096D06PL 5', mRNA sequence
          Length = 676

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 193 caaggaaacaaacaacca 210
           ||||||||||||||||||
Sbjct: 578 caaggaaacaaacaacca 595



>gb|BI271474.1|BI271474 NF057H04FL1F1044 Developing flower Medicago truncatula cDNA clone
           NF057H04FL 5', mRNA sequence
          Length = 672

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 193 caaggaaacaaacaacca 210
           ||||||||||||||||||
Sbjct: 369 caaggaaacaaacaacca 386



>gb|BQ147956.1|BQ147956 NF049B03FL1F1028 Developing flower Medicago truncatula cDNA clone
           NF049B03FL 5', mRNA sequence
          Length = 397

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 193 caaggaaacaaacaacca 210
           ||||||||||||||||||
Sbjct: 220 caaggaaacaaacaacca 237



>gb|CA917820.1|CA917820 EST641967 GPOD Medicago truncatula cDNA clone GPOD-37I22, mRNA
           sequence
          Length = 825

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 193 caaggaaacaaacaacca 210
           ||||||||||||||||||
Sbjct: 433 caaggaaacaaacaacca 450



>gb|CA917830.1|CA917830 EST641977 GPOD Medicago truncatula cDNA clone GPOD-37K22, mRNA
           sequence
          Length = 863

 Score = 36.2 bits (18), Expect = 4.2
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 193 caaggaaacaaacaacca 210
           ||||||||||||||||||
Sbjct: 433 caaggaaacaaacaacca 450



  Database: Mt_nucl_with_EST.fasta
    Posted date:  May 2, 2006  2:46 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 198,016
Number of Sequences: 392609
Number of extensions: 198016
Number of successful extensions: 10716
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10699
Number of HSP's gapped (non-prelim): 17
length of query: 771
length of database: 441,732,993
effective HSP length: 20
effective length of query: 751
effective length of database: 433,880,813
effective search space: 325844490563
effective search space used: 325844490563
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)