BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 9009927.2.1
         (404 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR970161.1|  mth4-3L24FM1 BAC end, cultivar Jemalong A17...    40   0.14 
gb|BF643814.1|BF643814  NF058A04EC1F1033 Elicited cell cultu...    40   0.14 
gb|AC148755.6|  Medicago truncatula clone mth2-24n16, comple...    40   0.14 
gb|AC174300.4|  Medicago truncatula clone mth2-84c16, comple...    40   0.14 

>emb|CR970161.1| mth4-3L24FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 486

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                       
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaa 259
           ||||| ||||| || ||||||||||| |||||||| ||| ||||
Sbjct: 474 agaacagacaatgagatcaagaactattggaacactcacatcaa 431



>gb|BF643814.1|BF643814 NF058A04EC1F1033 Elicited cell culture Medicago truncatula cDNA
           clone NF058A04EC 5', mRNA sequence
          Length = 545

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 38/44 (86%)
 Strand = Plus / Plus

                                                       
Query: 216 agaaccgacaacgacatcaagaactactggaacacccacctcaa 259
           ||||| ||||| || ||||||||||| |||||||| ||| ||||
Sbjct: 283 agaacagacaatgagatcaagaactattggaacactcacatcaa 326



>gb|AC148755.6| Medicago truncatula clone mth2-24n16, complete sequence
          Length = 119876

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                         
Query: 216   agaaccgacaacgacatcaagaactactggaacacccacctcaa 259
             ||||| ||||| || ||||||||||| |||||||| ||| ||||
Sbjct: 45784 agaacagacaatgagatcaagaactattggaacactcacatcaa 45741



>gb|AC174300.4| Medicago truncatula clone mth2-84c16, complete sequence
          Length = 139426

 Score = 40.1 bits (20), Expect = 0.14
 Identities = 38/44 (86%)
 Strand = Plus / Minus

                                                          
Query: 216    agaaccgacaacgacatcaagaactactggaacacccacctcaa 259
              ||||| ||||| || ||||||||||| |||||||| ||| ||||
Sbjct: 115014 agaacagacaatgagatcaagaactattggaacactcacatcaa 114971



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 45,640
Number of Sequences: 392609
Number of extensions: 45640
Number of successful extensions: 3672
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3668
Number of HSP's gapped (non-prelim): 4
length of query: 404
length of database: 441,732,993
effective HSP length: 19
effective length of query: 385
effective length of database: 434,273,422
effective search space: 167195267470
effective search space used: 167195267470
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)