BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635788.2.1
(753 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG956418.1|CG956418 MBEDG83TFC mth2 Medicago truncatula ... 40 0.26
emb|CR504418.1| mth2-182D22RM1 BAC end, cultivar Jemalong A... 40 0.26
gb|AW689565.1|AW689565 NF021D03ST1F1000 Developing stem Med... 40 0.26
gb|AW695940.1|AW695940 NF100B10ST1F1080 Developing stem Med... 40 0.26
gb|AL372218.1|AL372218 MtBA49D07F1 MtBA Medicago truncatula... 40 0.26
gb|BF644528.1|BF644528 NF110F01EC1F1013 Elicited cell cultu... 40 0.26
gb|BF645533.1|BF645533 NF037A10EC1F1072 Elicited cell cultu... 40 0.26
gb|BF649438.1|BF649438 NF080C04EC1F1033 Elicited cell cultu... 40 0.26
gb|BE249220.2|BE249220 NF024C01DT1F1003 Drought Medicago tr... 40 0.26
gb|BI307977.1|BI307977 EST529387 GPOD Medicago truncatula c... 40 0.26
gb|CB891343.1|CB891343 EST648312 KV3 Medicago truncatula cD... 40 0.26
gb|CB891347.1|CB891347 EST648316 KV3 Medicago truncatula cD... 40 0.26
gb|CX534238.1|CX534238 s13dNF0JA11MJ081_322235 Methyl Jasmo... 40 0.26
gb|CX534391.1|CX534391 s13dNF0RC03MJ022_322538 Methyl Jasmo... 40 0.26
gb|DW016308.1|DW016308 EST1225269 MTY Medicago truncatula c... 40 0.26
gb|AC144760.27| Medicago truncatula clone mth2-8p15, comple... 40 0.26
>gb|CG956418.1|CG956418 MBEDG83TFC mth2 Medicago truncatula genomic clone 31N21, DNA
sequence
Length = 867
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 667 gagagcaagaagaagaagaa 686
||||||||||||||||||||
Sbjct: 16 gagagcaagaagaagaagaa 35
>emb|CR504418.1| mth2-182D22RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 566
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 493 agagcaagaagaagaagaag 474
>gb|AW689565.1|AW689565 NF021D03ST1F1000 Developing stem Medicago truncatula cDNA clone
NF021D03ST 5', mRNA sequence
Length = 617
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 153 agagcaagaagaagaagaag 134
>gb|AW695940.1|AW695940 NF100B10ST1F1080 Developing stem Medicago truncatula cDNA clone
NF100B10ST 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 149 gagcaagaagaagaagaagg 130
>gb|AL372218.1|AL372218 MtBA49D07F1 MtBA Medicago truncatula cDNA clone MtBA49D07 T3, mRNA
sequence
Length = 423
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 125 gagcaagaagaagaagaagg 106
>gb|BF644528.1|BF644528 NF110F01EC1F1013 Elicited cell culture Medicago truncatula cDNA
clone NF110F01EC 5', mRNA sequence
Length = 306
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 122 gagcaagaagaagaagaagg 103
>gb|BF645533.1|BF645533 NF037A10EC1F1072 Elicited cell culture Medicago truncatula cDNA
clone NF037A10EC 5', mRNA sequence
Length = 660
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 145 gagcaagaagaagaagaagg 126
>gb|BF649438.1|BF649438 NF080C04EC1F1033 Elicited cell culture Medicago truncatula cDNA
clone NF080C04EC 5', mRNA sequence
Length = 503
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 93 gagcaagaagaagaagaagg 74
>gb|BE249220.2|BE249220 NF024C01DT1F1003 Drought Medicago truncatula cDNA clone NF024C01DT
5', mRNA sequence
Length = 560
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 139 gagcaagaagaagaagaagg 120
>gb|BI307977.1|BI307977 EST529387 GPOD Medicago truncatula cDNA clone pGPOD-1D12 5' end,
mRNA sequence
Length = 767
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 40 gagcaagaagaagaagaagg 21
>gb|CB891343.1|CB891343 EST648312 KV3 Medicago truncatula cDNA clone KV3-49N18, mRNA
sequence
Length = 861
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 91 gagcaagaagaagaagaagg 72
>gb|CB891347.1|CB891347 EST648316 KV3 Medicago truncatula cDNA clone KV3-49P2, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 40 gagcaagaagaagaagaagg 21
>gb|CX534238.1|CX534238 s13dNF0JA11MJ081_322235 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 608
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 147 gagcaagaagaagaagaagg 128
>gb|CX534391.1|CX534391 s13dNF0RC03MJ022_322538 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 669
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 141 gagcaagaagaagaagaagg 122
>gb|DW016308.1|DW016308 EST1225269 MTY Medicago truncatula cDNA clone MTYAF60, mRNA
sequence
Length = 727
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 669 gagcaagaagaagaagaagg 688
||||||||||||||||||||
Sbjct: 184 gagcaagaagaagaagaagg 165
>gb|AC144760.27| Medicago truncatula clone mth2-8p15, complete sequence
Length = 108569
Score = 40.1 bits (20), Expect = 0.26
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 668 agagcaagaagaagaagaag 687
||||||||||||||||||||
Sbjct: 61397 agagcaagaagaagaagaag 61378
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 116,148
Number of Sequences: 392609
Number of extensions: 116148
Number of successful extensions: 27439
Number of sequences better than 0.5: 16
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27420
Number of HSP's gapped (non-prelim): 19
length of query: 753
length of database: 441,732,993
effective HSP length: 19
effective length of query: 734
effective length of database: 434,273,422
effective search space: 318756691748
effective search space used: 318756691748
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)