BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8635730.2.1
(1031 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC144481.6| Medicago truncatula clone mth2-35e10, comple... 56 6e-006
gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower M... 48 0.001
gb|BF003901.1|BF003901 EST432399 KV1 Medicago truncatula cD... 42 0.092
gb|BF649981.1|BF649981 NF083H10EC1F1090 Elicited cell cultu... 42 0.092
gb|BG588890.1|BG588890 EST490699 MHRP- Medicago truncatula ... 42 0.092
gb|BQ165859.1|BQ165859 EST611728 KVKC Medicago truncatula c... 42 0.092
gb|AW559245.1|AW559245 EST306081 DSIR Medicago truncatula c... 40 0.36
gb|AW691737.1|AW691737 NF043F09ST1F1000 Developing stem Med... 40 0.36
gb|BE202527.1|BE202527 EST392936 KV1 Medicago truncatula cD... 40 0.36
gb|BE203023.1|BE203023 EST403045 KV1 Medicago truncatula cD... 40 0.36
gb|AL370923.1|AL370923 MtBA40G08F1 MtBA Medicago truncatula... 40 0.36
gb|BE943154.1|BE943154 EST422733 MGHG Medicago truncatula c... 40 0.36
gb|BF004497.1|BF004497 EST432995 KV1 Medicago truncatula cD... 40 0.36
gb|BF004562.1|BF004562 EST433060 KV1 Medicago truncatula cD... 40 0.36
gb|BF520005.1|BF520005 EST457473 DSIL Medicago truncatula c... 40 0.36
gb|BF640221.1|BF640221 NF026B12IN1F1096 Insect herbivory Me... 40 0.36
gb|BF643207.1|BF643207 NF001E08EC1F1056 Elicited cell cultu... 40 0.36
gb|BF646754.1|BF646754 NF043E01EC1F1005 Elicited cell cultu... 40 0.36
gb|BF649676.1|BF649676 NF081C10EC1F1072 Elicited cell cultu... 40 0.36
gb|BE322183.2|BE322183 NF020A02IN1F1006 Insect herbivory Me... 40 0.36
gb|BG448019.1|BG448019 NF105D04EC1F1032 Elicited cell cultu... 40 0.36
gb|BG448324.1|BG448324 NF070C04EC1F1023 Elicited cell cultu... 40 0.36
gb|BG450817.1|BG450817 NF095F10DT1F1089 Drought Medicago tr... 40 0.36
gb|BG457003.1|BG457003 NF099D01PL1F1012 Phosphate starved l... 40 0.36
gb|BI267019.1|BI267019 NF091B09IN1F1077 Insect herbivory Me... 40 0.36
gb|BQ155060.1|BQ155060 NF075G11IR1F1088 Irradiated Medicago... 40 0.36
gb|BQ158041.1|BQ158041 NF018A01PL1F1002 Phosphate starved l... 40 0.36
gb|CB891814.1|CB891814 EST648783 KV3 Medicago truncatula cD... 40 0.36
gb|CX517105.1|CX517105 s13dNF12F05VI047_398681 Virus-Infect... 40 0.36
gb|CX526935.1|CX526935 s13dNF37C01AT002_514382 Aphid-Infect... 40 0.36
gb|CX528560.1|CX528560 s13dNF55F11AT095_517632 Aphid-Infect... 40 0.36
gb|DW016362.1|DW016362 EST1225323 MTY Medicago truncatula c... 40 0.36
gb|DW017435.1|DW017435 EST1226396 MTY Medicago truncatula c... 40 0.36
>gb|AC144481.6| Medicago truncatula clone mth2-35e10, complete sequence
Length = 127189
Score = 56.0 bits (28), Expect = 6e-006
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccagctcctcct 267
||||||||||||||||||||||||||||
Sbjct: 119316 gccgccgccgccaccaccagctcctcct 119289
>gb|BQ148404.1|BQ148404 NF068A05FL1F1037 Developing flower Medicago truncatula cDNA clone
NF068A05FL 5', mRNA sequence
Length = 523
Score = 48.1 bits (24), Expect = 0.001
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 4 tgcggtaagagctgccgtcttcgctggctcaactacctccgccc 47
||||||||||| |||||||| || ||| |||||||||| |||||
Sbjct: 167 tgcggtaagagttgccgtctccggtggatcaactacctacgccc 124
>gb|BF003901.1|BF003901 EST432399 KV1 Medicago truncatula cDNA clone pKV1-14C3, mRNA
sequence
Length = 534
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 172 aagaactactggaacaccaagctcaagaa 200
|||||||||||||| |||||||| |||||
Sbjct: 295 aagaactactggaataccaagcttaagaa 323
>gb|BF649981.1|BF649981 NF083H10EC1F1090 Elicited cell culture Medicago truncatula cDNA
clone NF083H10EC 5', mRNA sequence
Length = 658
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 172 aagaactactggaacaccaagctcaagaa 200
|||||||||||||| |||||||| |||||
Sbjct: 333 aagaactactggaataccaagcttaagaa 361
>gb|BG588890.1|BG588890 EST490699 MHRP- Medicago truncatula cDNA clone pMHRP-57H16, mRNA
sequence
Length = 736
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 172 aagaactactggaacaccaagctcaagaa 200
|||||||||||||| |||||||| |||||
Sbjct: 310 aagaactactggaataccaagcttaagaa 338
>gb|BQ165859.1|BQ165859 EST611728 KVKC Medicago truncatula cDNA clone pKVKC-12C6, mRNA
sequence
Length = 735
Score = 42.1 bits (21), Expect = 0.092
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 172 aagaactactggaacaccaagctcaagaa 200
|||||||||||||| |||||||| |||||
Sbjct: 312 aagaactactggaataccaagcttaagaa 340
>gb|AW559245.1|AW559245 EST306081 DSIR Medicago truncatula cDNA clone pDSIR-7H8, mRNA
sequence
Length = 606
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|AW691737.1|AW691737 NF043F09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF043F09ST 5', mRNA sequence
Length = 658
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 207 gccgccgccgccaccaccag 188
>gb|BE202527.1|BE202527 EST392936 KV1 Medicago truncatula cDNA clone pKV1-13C7, mRNA
sequence
Length = 653
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|BE203023.1|BE203023 EST403045 KV1 Medicago truncatula cDNA clone pKV1-4E1, mRNA
sequence
Length = 425
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|AL370923.1|AL370923 MtBA40G08F1 MtBA Medicago truncatula cDNA clone MtBA40G08 T3, mRNA
sequence
Length = 492
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 172 gccgccgccgccaccaccag 153
>gb|BE943154.1|BE943154 EST422733 MGHG Medicago truncatula cDNA clone pMGHG-14P2, mRNA
sequence
Length = 384
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 169 gccgccgccgccaccaccag 150
>gb|BF004497.1|BF004497 EST432995 KV1 Medicago truncatula cDNA clone pKV1-17F18, mRNA
sequence
Length = 621
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|BF004562.1|BF004562 EST433060 KV1 Medicago truncatula cDNA clone pKV1-18A13, mRNA
sequence
Length = 472
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|BF520005.1|BF520005 EST457473 DSIL Medicago truncatula cDNA clone pDSIL-22I10, mRNA
sequence
Length = 316
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 167 gccgccgccgccaccaccag 148
>gb|BF640221.1|BF640221 NF026B12IN1F1096 Insect herbivory Medicago truncatula cDNA clone
NF026B12IN 5', mRNA sequence
Length = 625
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 216 gccgccgccgccaccaccag 197
>gb|BF643207.1|BF643207 NF001E08EC1F1056 Elicited cell culture Medicago truncatula cDNA
clone NF001E08EC 5', mRNA sequence
Length = 524
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 213 gccgccgccgccaccaccag 194
>gb|BF646754.1|BF646754 NF043E01EC1F1005 Elicited cell culture Medicago truncatula cDNA
clone NF043E01EC 5', mRNA sequence
Length = 580
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 224 gccgccgccgccaccaccag 205
>gb|BF649676.1|BF649676 NF081C10EC1F1072 Elicited cell culture Medicago truncatula cDNA
clone NF081C10EC 5', mRNA sequence
Length = 612
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 228 gccgccgccgccaccaccag 209
>gb|BE322183.2|BE322183 NF020A02IN1F1006 Insect herbivory Medicago truncatula cDNA clone
NF020A02IN 5', mRNA sequence
Length = 515
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 166 gccgccgccgccaccaccag 147
>gb|BG448019.1|BG448019 NF105D04EC1F1032 Elicited cell culture Medicago truncatula cDNA
clone NF105D04EC 5', mRNA sequence
Length = 657
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 202 gccgccgccgccaccaccag 183
>gb|BG448324.1|BG448324 NF070C04EC1F1023 Elicited cell culture Medicago truncatula cDNA
clone NF070C04EC 5', mRNA sequence
Length = 638
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 222 gccgccgccgccaccaccag 203
>gb|BG450817.1|BG450817 NF095F10DT1F1089 Drought Medicago truncatula cDNA clone NF095F10DT
5', mRNA sequence
Length = 686
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 219 gccgccgccgccaccaccag 200
>gb|BG457003.1|BG457003 NF099D01PL1F1012 Phosphate starved leaf Medicago truncatula cDNA
clone NF099D01PL 5', mRNA sequence
Length = 673
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 214 gccgccgccgccaccaccag 195
>gb|BI267019.1|BI267019 NF091B09IN1F1077 Insect herbivory Medicago truncatula cDNA clone
NF091B09IN 5', mRNA sequence
Length = 391
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 221 gccgccgccgccaccaccag 202
>gb|BQ155060.1|BQ155060 NF075G11IR1F1088 Irradiated Medicago truncatula cDNA clone
NF075G11IR 5', mRNA sequence
Length = 651
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 58 gccgccgccgccaccaccag 39
>gb|BQ158041.1|BQ158041 NF018A01PL1F1002 Phosphate starved leaf Medicago truncatula cDNA
clone NF018A01PL 5', mRNA sequence
Length = 1055
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 393 gccgccgccgccaccaccag 374
>gb|CB891814.1|CB891814 EST648783 KV3 Medicago truncatula cDNA clone KV3-52A4, mRNA
sequence
Length = 542
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 212 gccgccgccgccaccaccag 193
>gb|CX517105.1|CX517105 s13dNF12F05VI047_398681 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 536
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 218 gccgccgccgccaccaccag 199
>gb|CX526935.1|CX526935 s13dNF37C01AT002_514382 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 624
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 233 gccgccgccgccaccaccag 214
>gb|CX528560.1|CX528560 s13dNF55F11AT095_517632 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 607
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 91 gccgccgccgccaccaccag 72
>gb|DW016362.1|DW016362 EST1225323 MTY Medicago truncatula cDNA clone MTYAG25, mRNA
sequence
Length = 702
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 211 gccgccgccgccaccaccag 192
>gb|DW017435.1|DW017435 EST1226396 MTY Medicago truncatula cDNA clone MTYAT58, mRNA
sequence
Length = 832
Score = 40.1 bits (20), Expect = 0.36
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 240 gccgccgccgccaccaccag 259
||||||||||||||||||||
Sbjct: 244 gccgccgccgccaccaccag 225
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,636
Number of Sequences: 392609
Number of extensions: 132636
Number of successful extensions: 10882
Number of sequences better than 0.5: 33
Number of HSP's better than 0.5 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10792
Number of HSP's gapped (non-prelim): 90
length of query: 1031
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1011
effective length of database: 433,880,813
effective search space: 438653501943
effective search space used: 438653501943
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)