BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8612115.2.1
         (1078 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL386384.1|AL386384  MtBC34C12F1 MtBC Medicago truncatula...    50   4e-004
gb|AC146568.11|  Medicago truncatula clone mth2-101o18, comp...    50   4e-004

>gb|AL386384.1|AL386384 MtBC34C12F1 MtBC Medicago truncatula cDNA clone MtBC34C12 T3, mRNA
           sequence
          Length = 428

 Score = 50.2 bits (25), Expect = 4e-004
 Identities = 28/29 (96%)
 Strand = Plus / Plus

                                        
Query: 45  atctactggggccagaacggcaacgaggg 73
           |||||||||||||||||||| ||||||||
Sbjct: 122 atctactggggccagaacggaaacgaggg 150



>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 50.2 bits (25), Expect = 4e-004
 Identities = 28/29 (96%)
 Strand = Plus / Minus

                                          
Query: 45    atctactggggccagaacggcaacgaggg 73
             |||||||||||||||||||| ||||||||
Sbjct: 44995 atctactggggccagaacggaaacgaggg 44967



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.38    0.711     1.31 

Gapped
Lambda     K      H
    1.38    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 72,207
Number of Sequences: 392609
Number of extensions: 72207
Number of successful extensions: 4308
Number of sequences better than  0.5: 2
Number of HSP's better than  0.5 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4305
Number of HSP's gapped (non-prelim): 3
length of query: 1078
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1058
effective length of database: 433,880,813
effective search space: 459045900154
effective search space used: 459045900154
T: 0
A: 0
X1: 11 (21.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 20 (40.2 bits)