BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 8228901.3.1
         (1173 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR310407.1|  mte1-32A19RM1 BAC end, cultivar Jemalong A1...    40   0.41 
emb|CR931810.3|  Medicago truncatula chromosome 5 clone mte1...    40   0.41 
emb|CT010518.6|  Medicago truncatula chromosome 3 clone MTH2...    40   0.41 
gb|AC157646.12|  Medicago truncatula clone mth2-164n9, WORKI...    40   0.41 

>emb|CR310407.1| mte1-32A19RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 698

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 877 aaactaccttcaaagaaaat 896
           ||||||||||||||||||||
Sbjct: 26  aaactaccttcaaagaaaat 45



>emb|CR931810.3| Medicago truncatula chromosome 5 clone mte1-27n5, WORKING DRAFT SEQUENCE
          Length = 138473

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 600    aaaaatgactttgtatgtttttct 623
              |||||||| |||||||||||||||
Sbjct: 103403 aaaaatgaatttgtatgtttttct 103426



>emb|CT010518.6| Medicago truncatula chromosome 3 clone MTH2-78A9, WORKING DRAFT
             SEQUENCE
          Length = 135517

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 726   atttttgtgtttatatacat 745
             ||||||||||||||||||||
Sbjct: 75408 atttttgtgtttatatacat 75427



>gb|AC157646.12| Medicago truncatula clone mth2-164n9, WORKING DRAFT SEQUENCE, 5
             unordered pieces
          Length = 118570

 Score = 40.1 bits (20), Expect = 0.41
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 714   tttgtgtcacccatttttgtgttt 737
             |||||||||| |||||||||||||
Sbjct: 28908 tttgtgtcactcatttttgtgttt 28885



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 390,200
Number of Sequences: 392609
Number of extensions: 390200
Number of successful extensions: 32320
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32280
Number of HSP's gapped (non-prelim): 40
length of query: 1173
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1153
effective length of database: 433,880,813
effective search space: 500264577389
effective search space used: 500264577389
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)