BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 8028975.2.1
(595 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AL380335.1|AL380335 MtBB51G10F1 MtBB Medicago truncatula... 94 2e-017
gb|CB892354.1|CB892354 EST649323 KV3 Medicago truncatula cD... 94 2e-017
gb|CB894403.1|CB894403 EST647195 HOGA Medicago truncatula c... 94 2e-017
gb|AC147179.15| Medicago truncatula clone mth2-142n19, comp... 84 2e-014
gb|AL380336.1|AL380336 MtBB51G10R1 MtBB Medicago truncatula... 56 3e-006
gb|CB891329.1|CB891329 EST648298 KV3 Medicago truncatula cD... 56 3e-006
gb|CA920769.1|CA920769 EST638487 MTUS Medicago truncatula c... 40 0.21
gb|AC144539.7| Medicago truncatula clone mth2-11o10, comple... 40 0.21
gb|AC152185.1| Medicago truncatula chromosome 2 BAC clone m... 40 0.21
gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone m... 40 0.21
>gb|AL380335.1|AL380335 MtBB51G10F1 MtBB Medicago truncatula cDNA clone MtBB51G10 T3, mRNA
sequence
Length = 479
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 17 gaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgaccca 76
||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 373 gaagtttggcaggttaaaggtggttcagtatttgacaacattttgatttgcgatgatcct 432
Query: 77 gactatgcaagacatgttgtagatgaa 103
|| ||||||| ||| ||||| ||||||
Sbjct: 433 gaatatgcaaaacaagttgttgatgaa 459
>gb|CB892354.1|CB892354 EST649323 KV3 Medicago truncatula cDNA clone KV3-54A7, mRNA
sequence
Length = 715
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Minus
Query: 17 gaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgaccca 76
||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 453 gaagtttggcaggttaaaggtggttcagtatttgacaacattttgatttgcgatgatcct 394
Query: 77 gactatgcaagacatgttgtagatgaa 103
|| ||||||| ||| ||||| ||||||
Sbjct: 393 gaatatgcaaaacaagttgttgatgaa 367
>gb|CB894403.1|CB894403 EST647195 HOGA Medicago truncatula cDNA clone HOGA-31G7, mRNA
sequence
Length = 688
Score = 93.7 bits (47), Expect = 2e-017
Identities = 77/87 (88%)
Strand = Plus / Plus
Query: 17 gaagtatggcaggtcaaagctggttcagtttttgacaacattttgatttgcgatgaccca 76
||||| |||||||| |||| ||||||||| |||||||||||||||||||||||||| ||
Sbjct: 244 gaagtttggcaggttaaaggtggttcagtatttgacaacattttgatttgcgatgatcct 303
Query: 77 gactatgcaagacatgttgtagatgaa 103
|| ||||||| ||| ||||| ||||||
Sbjct: 304 gaatatgcaaaacaagttgttgatgaa 330
>gb|AC147179.15| Medicago truncatula clone mth2-142n19, complete sequence
Length = 113361
Score = 83.8 bits (42), Expect = 2e-014
Identities = 69/78 (88%)
Strand = Plus / Plus
Query: 26 caggtcaaagctggttcagtttttgacaacattttgatttgcgatgacccagactatgca 85
||||| |||| ||||||||| |||||||||||||||||||||||||| || || ||||||
Sbjct: 107260 caggttaaaggtggttcagtatttgacaacattttgatttgcgatgatcctgaatatgca 107319
Query: 86 agacatgttgtagatgaa 103
| ||| ||||| ||||||
Sbjct: 107320 aaacaagttgttgatgaa 107337
>gb|AL380336.1|AL380336 MtBB51G10R1 MtBB Medicago truncatula cDNA clone MtBB51G10 T7, mRNA
sequence
Length = 542
Score = 56.0 bits (28), Expect = 3e-006
Identities = 46/52 (88%)
Strand = Plus / Plus
Query: 52 caacattttgatttgcgatgacccagactatgcaagacatgttgtagatgaa 103
||||||||||||||||||||| || || ||||||| ||| ||||| ||||||
Sbjct: 1 caacattttgatttgcgatgatcctgaatatgcaaaacaagttgttgatgaa 52
>gb|CB891329.1|CB891329 EST648298 KV3 Medicago truncatula cDNA clone KV3-49L8, mRNA
sequence
Length = 871
Score = 56.0 bits (28), Expect = 3e-006
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 41 tcagtttttgacaacattttgatttgcgatga 72
||||| ||||||||||||||||||||||||||
Sbjct: 839 tcagtatttgacaacattttgatttgcgatga 870
>gb|CA920769.1|CA920769 EST638487 MTUS Medicago truncatula cDNA clone MTUS-32G8, mRNA
sequence
Length = 746
Score = 40.1 bits (20), Expect = 0.21
Identities = 56/68 (82%)
Strand = Plus / Minus
Query: 116 aataaggaggctgaaaaggaggcctttgaaggagctgaaagaaagaggaaggctagagaa 175
|||| ||||||||||||||| || ||||||| ||| |||| | | || | |||| | |||
Sbjct: 349 aatagggaggctgaaaaggaagcttttgaagaagcggaaaaagaaagaagggctcgggaa 290
Query: 176 gaagagga 183
||||||||
Sbjct: 289 gaagagga 282
>gb|AC144539.7| Medicago truncatula clone mth2-11o10, complete sequence
Length = 113167
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 143 gaaggagctgaaagaaagag 162
||||||||||||||||||||
Sbjct: 24496 gaaggagctgaaagaaagag 24477
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 143 gaaggagctgaaagaaagag 162
||||||||||||||||||||
Sbjct: 20203 gaaggagctgaaagaaagag 20184
>gb|AC152185.1| Medicago truncatula chromosome 2 BAC clone mth2-97e5, complete sequence
Length = 132467
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 143 gaaggagctgaaagaaagag 162
||||||||||||||||||||
Sbjct: 125280 gaaggagctgaaagaaagag 125261
Score = 40.1 bits (20), Expect = 0.21
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 143 gaaggagctgaaagaaagag 162
||||||||||||||||||||
Sbjct: 120987 gaaggagctgaaagaaagag 120968
>gb|AC154034.1| Medicago truncatula chromosome 7 BAC clone mth2-71n23, complete sequence
Length = 125195
Score = 40.1 bits (20), Expect = 0.21
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 100 tgaaacttttgctgcaaataagga 123
||||||||||||||| ||||||||
Sbjct: 102290 tgaaacttttgctgccaataagga 102267
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 161,219
Number of Sequences: 392609
Number of extensions: 161219
Number of successful extensions: 12565
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12535
Number of HSP's gapped (non-prelim): 30
length of query: 595
length of database: 441,732,993
effective HSP length: 19
effective length of query: 576
effective length of database: 434,273,422
effective search space: 250141491072
effective search space used: 250141491072
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)