BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297817.2.1
(687 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW775511.1|AW775511 EST334576 DSIL Medicago truncatula c... 46 0.004
gb|BE998455.1|BE998455 EST430178 GVSN Medicago truncatula c... 46 0.004
gb|BF003946.1|BF003946 EST432444 KV1 Medicago truncatula cD... 46 0.004
gb|BF003960.1|BF003960 EST432458 KV1 Medicago truncatula cD... 46 0.004
gb|BF632528.1|BF632528 NF039G04DT1F1033 Drought Medicago tr... 46 0.004
gb|BI264607.1|BI264607 NF108G05PL1F1040 Phosphate starved l... 46 0.004
gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone m... 44 0.015
gb|AC146703.19| Medicago truncatula clone mth2-22o12, WORKI... 42 0.061
emb|CR955008.2| Medicago truncatula chromosome 5 clone mte1... 42 0.061
emb|CR303127.1| mte1-21J2FM1 BAC end, cultivar Jemalong A17... 40 0.24
emb|CR308220.1| mte1-29J7FM1 BAC end, cultivar Jemalong A17... 40 0.24
gb|AW690594.1|AW690594 NF031E09ST1F1000 Developing stem Med... 40 0.24
gb|AC146575.3| Medicago truncatula clone mth2-145m4, comple... 40 0.24
gb|AC146855.5| Medicago truncatula clone mth2-16c23, comple... 40 0.24
gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone m... 40 0.24
gb|AC152886.11| Medicago truncatula clone mth2-84j21, compl... 40 0.24
gb|AC174299.2| Medicago truncatula clone mth2-80e19, WORKIN... 40 0.24
emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-... 40 0.24
>gb|AW775511.1|AW775511 EST334576 DSIL Medicago truncatula cDNA clone pDSIL-2C11, mRNA
sequence
Length = 761
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 145 atcctcctcctcttcttcttcct 123
>gb|BE998455.1|BE998455 EST430178 GVSN Medicago truncatula cDNA clone pGVSN-12A21, mRNA
sequence
Length = 619
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 147 atcctcctcctcttcttcttcct 125
>gb|BF003946.1|BF003946 EST432444 KV1 Medicago truncatula cDNA clone pKV1-14K9, mRNA
sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 159 atcctcctcctcttcttcttcct 137
>gb|BF003960.1|BF003960 EST432458 KV1 Medicago truncatula cDNA clone pKV1-14M19, mRNA
sequence
Length = 594
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 159 atcctcctcctcttcttcttcct 137
>gb|BF632528.1|BF632528 NF039G04DT1F1033 Drought Medicago truncatula cDNA clone NF039G04DT
5', mRNA sequence
Length = 211
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 81 atcctcctcctcttcttcttcct 59
>gb|BI264607.1|BI264607 NF108G05PL1F1040 Phosphate starved leaf Medicago truncatula cDNA
clone NF108G05PL 5', mRNA sequence
Length = 497
Score = 46.1 bits (23), Expect = 0.004
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 661 atcctcctcctcttcttcttcct 683
|||||||||||||||||||||||
Sbjct: 352 atcctcctcctcttcttcttcct 330
>gb|AC149135.2| Medicago truncatula chromosome 2 BAC clone mth2-31g23, complete
sequence
Length = 113812
Score = 44.1 bits (22), Expect = 0.015
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttcct 683
||||||||||||||||||||||
Sbjct: 77043 tcctcctcctcttcttcttcct 77064
>gb|AC146703.19| Medicago truncatula clone mth2-22o12, WORKING DRAFT SEQUENCE, 25
unordered pieces
Length = 235128
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 660 gatcctcctcctcttcttctt 680
|||||||||||||||||||||
Sbjct: 207066 gatcctcctcctcttcttctt 207046
>emb|CR955008.2| Medicago truncatula chromosome 5 clone mte1-51b2, COMPLETE SEQUENCE
Length = 110446
Score = 42.1 bits (21), Expect = 0.061
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 663 cctcctcctcttcttcttcct 683
|||||||||||||||||||||
Sbjct: 24435 cctcctcctcttcttcttcct 24415
>emb|CR303127.1| mte1-21J2FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 842
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 84 tcctcctcctcttcttcttc 103
>emb|CR308220.1| mte1-29J7FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 659
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 76 tcctcctcctcttcttcttc 95
>gb|AW690594.1|AW690594 NF031E09ST1F1000 Developing stem Medicago truncatula cDNA clone
NF031E09ST 5', mRNA sequence
Length = 633
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 220 tcctcctcctcttcttcttc 201
>gb|AC146575.3| Medicago truncatula clone mth2-145m4, complete sequence
Length = 117113
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 85348 tcctcctcctcttcttcttc 85367
>gb|AC146855.5| Medicago truncatula clone mth2-16c23, complete sequence
Length = 137979
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 21510 tcctcctcctcttcttcttc 21491
>gb|AC158498.3| Medicago truncatula chromosome 2 BAC clone mth2-65n13, complete
sequence
Length = 124573
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 50766 tcctcctcctcttcttcttc 50747
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 49863 tcctcctcctcttcttcttc 49844
>gb|AC152886.11| Medicago truncatula clone mth2-84j21, complete sequence
Length = 95367
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 15813 tcctcctcctcttcttcttc 15832
>gb|AC174299.2| Medicago truncatula clone mth2-80e19, WORKING DRAFT SEQUENCE
Length = 38556
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 22744 tcctcctcctcttcttcttc 22725
>emb|CR956402.15| M.truncatula DNA sequence from clone MTH2-50J5 on chromosome 3,
complete sequence
Length = 142361
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 662 tcctcctcctcttcttcttc 681
||||||||||||||||||||
Sbjct: 24293 tcctcctcctcttcttcttc 24274
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 153,683
Number of Sequences: 392609
Number of extensions: 153683
Number of successful extensions: 13788
Number of sequences better than 0.5: 18
Number of HSP's better than 0.5 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13665
Number of HSP's gapped (non-prelim): 121
length of query: 687
length of database: 441,732,993
effective HSP length: 19
effective length of query: 668
effective length of database: 434,273,422
effective search space: 290094645896
effective search space used: 290094645896
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)