BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 7297169.2.1
(545 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AQ917126.1|AQ917126 T233155b Medicago truncatula BAC lib... 46 0.003
gb|CG942802.1|CG942802 MBEMG29TF mth2 Medicago truncatula g... 46 0.003
emb|CR500034.1| mth2-177I23RM1 BAC end, cultivar Jemalong A... 46 0.003
gb|AL376970.1|AL376970 MtBB27E12F1 MtBB Medicago truncatula... 46 0.003
gb|BF631994.1|BF631994 NF025C11DT1F1083 Drought Medicago tr... 46 0.003
gb|BG644939.1|BG644939 EST506558 KV3 Medicago truncatula cD... 46 0.003
gb|BQ147307.1|BQ147307 NF039C05FL1F1037 Developing flower M... 46 0.003
gb|BE124129.1|BE124129 EST394254 DSIL Medicago truncatula c... 42 0.048
>gb|AQ917126.1|AQ917126 T233155b Medicago truncatula BAC library Medicago truncatula
genomic clone 22E21, DNA sequence
Length = 466
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 308 ttcaacatcatctctggcacatccatgtcatgccc 274
>gb|CG942802.1|CG942802 MBEMG29TF mth2 Medicago truncatula genomic clone 1F9, DNA sequence
Length = 781
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 314 ttcaacatcatctctggcacatccatgtcatgccc 280
>emb|CR500034.1| mth2-177I23RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 778
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 314 ttcaacatcatctctggcacatccatgtcatgccc 280
>gb|AL376970.1|AL376970 MtBB27E12F1 MtBB Medicago truncatula cDNA clone MtBB27E12 T3, mRNA
sequence
Length = 471
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 266 ttcaacatcatctctggcacatccatgtcatgccc 300
>gb|BF631994.1|BF631994 NF025C11DT1F1083 Drought Medicago truncatula cDNA clone NF025C11DT
5', mRNA sequence
Length = 636
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 332 ttcaacatcatctctggcacatccatgtcatgccc 366
>gb|BG644939.1|BG644939 EST506558 KV3 Medicago truncatula cDNA clone pKV3-38D20 5' end,
mRNA sequence
Length = 784
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 594 ttcaacatcatctctggcacatccatgtcatgccc 628
>gb|BQ147307.1|BQ147307 NF039C05FL1F1037 Developing flower Medicago truncatula cDNA clone
NF039C05FL 5', mRNA sequence
Length = 568
Score = 46.1 bits (23), Expect = 0.003
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 283 ttcaacatcatctccggcacgtccatgtcctgccc 317
|||||||||||||| ||||| |||||||| |||||
Sbjct: 137 ttcaacatcatctctggcacatccatgtcatgccc 171
>gb|BE124129.1|BE124129 EST394254 DSIL Medicago truncatula cDNA clone pDSIL-13K21, mRNA
sequence
Length = 582
Score = 42.1 bits (21), Expect = 0.048
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 293 tctccggcacgtccatgtcctgccc 317
||||||||||||||||||| |||||
Sbjct: 543 tctccggcacgtccatgtcatgccc 567
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 32,096
Number of Sequences: 392609
Number of extensions: 32096
Number of successful extensions: 1937
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 1929
Number of HSP's gapped (non-prelim): 8
length of query: 545
length of database: 441,732,993
effective HSP length: 19
effective length of query: 526
effective length of database: 434,273,422
effective search space: 228427819972
effective search space used: 228427819972
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)