BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704661.2.1
(798 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone m... 74 2e-011
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 54 2e-005
gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula g... 52 7e-005
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 52 7e-005
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 52 7e-005
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 48 0.001
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 48 0.001
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 48 0.001
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 48 0.001
gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula c... 46 0.005
gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula c... 44 0.018
gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula c... 44 0.018
gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower M... 42 0.071
gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula c... 42 0.071
gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula c... 42 0.071
gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula c... 42 0.071
gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula c... 42 0.071
gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula c... 42 0.071
gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula c... 42 0.071
gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula c... 42 0.071
gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula c... 42 0.071
gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula c... 40 0.28
gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula c... 40 0.28
gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula c... 40 0.28
gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula c... 40 0.28
gb|AJ499868.1|AJ499868 AJ499868 MTGIM Medicago truncatula c... 40 0.28
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
Length = 172016
Score = 73.8 bits (37), Expect = 2e-011
Identities = 130/161 (80%)
Strand = Plus / Plus
Query: 505 tcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgata 564
||||| ||||||||||| | ||||| |||||||||| || |||||| |||| | |||
Sbjct: 52691 tcaaatacattcattccgtaggcccacccacaagcatgaggatcaaaattctttgcaata 52750
Query: 565 atgggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctca 624
| |||||||| || ||||| || |||||| | ||||||||||| ||||||||||| ||
Sbjct: 52751 agaggatttgagaagttcagataacgatcaaatcgatggaaactttctccacaagtttct 52810
Query: 625 acagcaccgtttaccttccccttcatgttgattgaccaaag 665
||||| || ||||| || || |||| || |||||||||||
Sbjct: 52811 acagctccatttacattgcctttcaagtcaattgaccaaag 52851
Score = 48.1 bits (24), Expect = 0.001
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 256 atctccaaccagggcttcatgttgccattgta 287
||||||||||| ||||||||||| ||||||||
Sbjct: 52110 atctccaaccatggcttcatgttcccattgta 52141
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 54.0 bits (27), Expect = 2e-005
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcgaa 798
|||||||||||||||||||||||||||
Sbjct: 288 aggtacctgcccgggcggccgctcgaa 314
>gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula genomic clone 44G15, DNA
sequence
Length = 776
Score = 52.0 bits (26), Expect = 7e-005
Identities = 59/70 (84%)
Strand = Plus / Minus
Query: 568 ggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaaca 627
|||||||| || || ||||| | |||| | ||||||||||| || ||||||| ||||||
Sbjct: 291 ggatttgagaagttgaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaaca 232
Query: 628 gcaccgttta 637
||||||||||
Sbjct: 231 gcaccgttta 222
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 46 ggtacctgcccgggcggccgctcgaa 21
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 52.0 bits (26), Expect = 7e-005
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcgaa 798
||||||||||||||||||||||||||
Sbjct: 298 ggtacctgcccgggcggccgctcgaa 273
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgctcga 227
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgctcga 323
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgctcga 316
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 48.1 bits (24), Expect = 0.001
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgctcga 1
>gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula cDNA clone mtgmacc120004c11,
mRNA sequence
Length = 430
Score = 46.1 bits (23), Expect = 0.005
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 772 aggtacctgcccgggcggccgctcgaa 798
|||||||||||||||||| ||||||||
Sbjct: 404 aggtacctgcccgggcggacgctcgaa 430
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07,
mRNA sequence
Length = 366
Score = 44.1 bits (22), Expect = 0.018
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 342 gtacctgcccgggcggncgctcgaa 366
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
mRNA sequence
Length = 374
Score = 44.1 bits (22), Expect = 0.018
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 350 gtacctgcccgggcggncgctcgaa 374
>gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower Medicago truncatula cDNA clone
NF012D10FL 5', mRNA sequence
Length = 685
Score = 42.1 bits (21), Expect = 0.071
Identities = 30/33 (90%)
Strand = Plus / Minus
Query: 675 atccttctttactacgatgtcatcatcaagaaa 707
|||||||| || ||||||||||||||||||||
Sbjct: 326 atccttctgaacaacgatgtcatcatcaagaaa 294
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
mRNA sequence
Length = 611
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||| ||||||||||||
Sbjct: 33 gtacctgcccggccggccgctcgaa 9
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
mRNA sequence
Length = 557
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||| ||||||||||||
Sbjct: 533 gtacctgcccggacggccgctcgaa 557
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
mRNA sequence
Length = 451
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
||||||||||||||||||| |||||
Sbjct: 427 gtacctgcccgggcggccgttcgaa 451
>gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula cDNA clone mtgmacc120002b11,
mRNA sequence
Length = 438
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 414 gtacctgcccgggcggtcgctcgaa 438
>gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula cDNA clone mtgmacc120004a05,
mRNA sequence
Length = 360
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 773 ggtacctgcccgggcggccgctcga 797
|||||||||||||||| ||||||||
Sbjct: 25 ggtacctgcccgggcgcccgctcga 1
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
mRNA sequence
Length = 321
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 297 gtacctgcccgggcggacgctcgaa 321
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
mRNA sequence
Length = 527
Score = 42.1 bits (21), Expect = 0.071
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcga 797
|||||||||||||||| |||||||
Sbjct: 504 gtacctgcccgggcggncgctcga 527
>gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula cDNA clone mtgmacc120011b09,
mRNA sequence
Length = 314
Score = 42.1 bits (21), Expect = 0.071
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 774 gtacctgcccgggcggccgctcgaa 798
|||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggacgctcgaa 314
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05,
mRNA sequence
Length = 114
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07,
mRNA sequence
Length = 557
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
|||||||||||||| |||||||||
Sbjct: 24 gtacctgcccgggcagccgctcga 1
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
mRNA sequence
Length = 128
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||||||| ||||
Sbjct: 24 gtacctgcccgggcggccgttcga 1
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
mRNA sequence
Length = 298
Score = 40.1 bits (20), Expect = 0.28
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 774 gtacctgcccgggcggccgctcga 797
||||||||||||||| ||||||||
Sbjct: 24 gtacctgcccgggcgcccgctcga 1
>gb|AJ499868.1|AJ499868 AJ499868 MTGIM Medicago truncatula cDNA clone mtgmacc120009e06,
mRNA sequence
Length = 363
Score = 40.1 bits (20), Expect = 0.28
Identities = 27/28 (96%), Gaps = 1/28 (3%)
Strand = Plus / Minus
Query: 770 acaggtacctgcccgggcggccgctcga 797
|||||||||||||| |||||||||||||
Sbjct: 27 acaggtacctgccc-ggcggccgctcga 1
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 226,574
Number of Sequences: 392609
Number of extensions: 226574
Number of successful extensions: 16304
Number of sequences better than 0.5: 26
Number of HSP's better than 0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16272
Number of HSP's gapped (non-prelim): 32
length of query: 798
length of database: 441,732,993
effective HSP length: 20
effective length of query: 778
effective length of database: 433,880,813
effective search space: 337559272514
effective search space used: 337559272514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)