BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 5704661.2.1
         (798 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC161399.2|  Medicago truncatula chromosome 2 BAC clone m...    74   2e-011
gb|AJ500566.1|AJ500566  AJ500566 MTGIM Medicago truncatula c...    54   2e-005
gb|CG921442.1|CG921442  MBEFI44TR mth2 Medicago truncatula g...    52   7e-005
gb|AJ500301.1|AJ500301  AJ500301 MTGIM Medicago truncatula c...    52   7e-005
gb|AJ621860.1|AJ621860  AJ621860 Medicago truncatula J5 root...    52   7e-005
gb|AJ500181.1|AJ500181  AJ500181 MTGIM Medicago truncatula c...    48   0.001
gb|AJ500217.1|AJ500217  AJ500217 MTGIM Medicago truncatula c...    48   0.001
gb|AJ500711.1|AJ500711  AJ500711 MTGIM Medicago truncatula c...    48   0.001
gb|AJ864417.1|AJ864417  AJ864417 Medicago truncatula cv. J5 ...    48   0.001
gb|AJ499442.1|AJ499442  AJ499442 MTGIM Medicago truncatula c...    46   0.005
gb|AJ499175.1|AJ499175  AJ499175 MTGIM Medicago truncatula c...    44   0.018
gb|AJ499720.1|AJ499720  AJ499720 MTGIM Medicago truncatula c...    44   0.018
gb|BI271827.1|BI271827  NF012D10FL1F1089 Developing flower M...    42   0.071
gb|AJ500295.1|AJ500295  AJ500295 MTGIM Medicago truncatula c...    42   0.071
gb|AJ500529.1|AJ500529  AJ500529 MTGIM Medicago truncatula c...    42   0.071
gb|AJ500700.1|AJ500700  AJ500700 MTGIM Medicago truncatula c...    42   0.071
gb|AJ499278.1|AJ499278  AJ499278 MTGIM Medicago truncatula c...    42   0.071
gb|AJ499414.1|AJ499414  AJ499414 MTGIM Medicago truncatula c...    42   0.071
gb|AJ499517.1|AJ499517  AJ499517 MTGIM Medicago truncatula c...    42   0.071
gb|AJ499942.1|AJ499942  AJ499942 MTGIM Medicago truncatula c...    42   0.071
gb|AJ499990.1|AJ499990  AJ499990 MTGIM Medicago truncatula c...    42   0.071
gb|AJ500088.1|AJ500088  AJ500088 MTGIM Medicago truncatula c...    40   0.28 
gb|AJ500185.1|AJ500185  AJ500185 MTGIM Medicago truncatula c...    40   0.28 
gb|AJ499470.1|AJ499470  AJ499470 MTGIM Medicago truncatula c...    40   0.28 
gb|AJ499829.1|AJ499829  AJ499829 MTGIM Medicago truncatula c...    40   0.28 
gb|AJ499868.1|AJ499868  AJ499868 MTGIM Medicago truncatula c...    40   0.28 
>gb|AC161399.2| Medicago truncatula chromosome 2 BAC clone mte1-30k4, complete sequence
          Length = 172016

 Score = 73.8 bits (37), Expect = 2e-011
 Identities = 130/161 (80%)
 Strand = Plus / Plus

                                                                         
Query: 505   tcaaacacattcattccaaaagcccaaacacaagcatgtgggtcaaaactcttggtgata 564
             ||||| |||||||||||  | |||||  |||||||||| || |||||| |||| |  |||
Sbjct: 52691 tcaaatacattcattccgtaggcccacccacaagcatgaggatcaaaattctttgcaata 52750

                                                                         
Query: 565   atgggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctca 624
             |  |||||||| || ||||| || |||||| | ||||||||||| ||||||||||| || 
Sbjct: 52751 agaggatttgagaagttcagataacgatcaaatcgatggaaactttctccacaagtttct 52810

                                                      
Query: 625   acagcaccgtttaccttccccttcatgttgattgaccaaag 665
             ||||| || ||||| || || |||| ||  |||||||||||
Sbjct: 52811 acagctccatttacattgcctttcaagtcaattgaccaaag 52851

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 30/32 (93%)
 Strand = Plus / Plus

                                             
Query: 256   atctccaaccagggcttcatgttgccattgta 287
             ||||||||||| ||||||||||| ||||||||
Sbjct: 52110 atctccaaccatggcttcatgttcccattgta 52141
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
           mRNA sequence
          Length = 406

 Score = 54.0 bits (27), Expect = 2e-005
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 772 aggtacctgcccgggcggccgctcgaa 798
           |||||||||||||||||||||||||||
Sbjct: 288 aggtacctgcccgggcggccgctcgaa 314
>gb|CG921442.1|CG921442 MBEFI44TR mth2 Medicago truncatula genomic clone 44G15, DNA
           sequence
          Length = 776

 Score = 52.0 bits (26), Expect = 7e-005
 Identities = 59/70 (84%)
 Strand = Plus / Minus

                                                                       
Query: 568 ggatttgaaaaattcaggtatcgatcatagcgatggaaactctctccacaagtctcaaca 627
           |||||||| || || ||||| | |||| | |||||||||||  || ||||||| ||||||
Sbjct: 291 ggatttgagaagttgaggtaaccatcaaaacgatggaaacttcctgcacaagtttcaaca 232

                     
Query: 628 gcaccgttta 637
           ||||||||||
Sbjct: 231 gcaccgttta 222
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
           mRNA sequence
          Length = 164

 Score = 52.0 bits (26), Expect = 7e-005
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 773 ggtacctgcccgggcggccgctcgaa 798
           ||||||||||||||||||||||||||
Sbjct: 46  ggtacctgcccgggcggccgctcgaa 21
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
           clone MtGmEs470, mRNA sequence
          Length = 1151

 Score = 52.0 bits (26), Expect = 7e-005
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                     
Query: 773 ggtacctgcccgggcggccgctcgaa 798
           ||||||||||||||||||||||||||
Sbjct: 298 ggtacctgcccgggcggccgctcgaa 273
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
           mRNA sequence
          Length = 614

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgctcga 227
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
           mRNA sequence
          Length = 458

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgctcga 323
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
           mRNA sequence
          Length = 591

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgctcga 316
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
           clone MtPfEs361, mRNA sequence
          Length = 593

 Score = 48.1 bits (24), Expect = 0.001
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||||||||||||
Sbjct: 24  gtacctgcccgggcggccgctcga 1
>gb|AJ499442.1|AJ499442 AJ499442 MTGIM Medicago truncatula cDNA clone mtgmacc120004c11,
           mRNA sequence
          Length = 430

 Score = 46.1 bits (23), Expect = 0.005
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 772 aggtacctgcccgggcggccgctcgaa 798
           |||||||||||||||||| ||||||||
Sbjct: 404 aggtacctgcccgggcggacgctcgaa 430
>gb|AJ499175.1|AJ499175 AJ499175 MTGIM Medicago truncatula cDNA clone mtgmacc120001a07,
           mRNA sequence
          Length = 366

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||||||| ||||||||
Sbjct: 342 gtacctgcccgggcggncgctcgaa 366
>gb|AJ499720.1|AJ499720 AJ499720 MTGIM Medicago truncatula cDNA clone mtgmacc120007f12,
           mRNA sequence
          Length = 374

 Score = 44.1 bits (22), Expect = 0.018
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||||||| ||||||||
Sbjct: 350 gtacctgcccgggcggncgctcgaa 374
>gb|BI271827.1|BI271827 NF012D10FL1F1089 Developing flower Medicago truncatula cDNA clone
           NF012D10FL 5', mRNA sequence
          Length = 685

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 675 atccttctttactacgatgtcatcatcaagaaa 707
           ||||||||  || ||||||||||||||||||||
Sbjct: 326 atccttctgaacaacgatgtcatcatcaagaaa 294
>gb|AJ500295.1|AJ500295 AJ500295 MTGIM Medicago truncatula cDNA clone mtgmacc120014h01,
           mRNA sequence
          Length = 611

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||| ||||||||||||
Sbjct: 33  gtacctgcccggccggccgctcgaa 9
>gb|AJ500529.1|AJ500529 AJ500529 MTGIM Medicago truncatula cDNA clone mtgmacc120017d07,
           mRNA sequence
          Length = 557

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||| ||||||||||||
Sbjct: 533 gtacctgcccggacggccgctcgaa 557
>gb|AJ500700.1|AJ500700 AJ500700 MTGIM Medicago truncatula cDNA clone mtgmacc120019c06,
           mRNA sequence
          Length = 451

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           ||||||||||||||||||| |||||
Sbjct: 427 gtacctgcccgggcggccgttcgaa 451
>gb|AJ499278.1|AJ499278 AJ499278 MTGIM Medicago truncatula cDNA clone mtgmacc120002b11,
           mRNA sequence
          Length = 438

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||||||| ||||||||
Sbjct: 414 gtacctgcccgggcggtcgctcgaa 438
>gb|AJ499414.1|AJ499414 AJ499414 MTGIM Medicago truncatula cDNA clone mtgmacc120004a05,
           mRNA sequence
          Length = 360

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 773 ggtacctgcccgggcggccgctcga 797
           |||||||||||||||| ||||||||
Sbjct: 25  ggtacctgcccgggcgcccgctcga 1
>gb|AJ499517.1|AJ499517 AJ499517 MTGIM Medicago truncatula cDNA clone mtgmacc120005b12,
           mRNA sequence
          Length = 321

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||||||| ||||||||
Sbjct: 297 gtacctgcccgggcggacgctcgaa 321
>gb|AJ499942.1|AJ499942 AJ499942 MTGIM Medicago truncatula cDNA clone mtgmacc120010e04,
           mRNA sequence
          Length = 527

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           |||||||||||||||| |||||||
Sbjct: 504 gtacctgcccgggcggncgctcga 527
>gb|AJ499990.1|AJ499990 AJ499990 MTGIM Medicago truncatula cDNA clone mtgmacc120011b09,
           mRNA sequence
          Length = 314

 Score = 42.1 bits (21), Expect = 0.071
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 774 gtacctgcccgggcggccgctcgaa 798
           |||||||||||||||| ||||||||
Sbjct: 290 gtacctgcccgggcggacgctcgaa 314
>gb|AJ500088.1|AJ500088 AJ500088 MTGIM Medicago truncatula cDNA clone mtgmacc120012e05,
           mRNA sequence
          Length = 114

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||| ||||||||
Sbjct: 24  gtacctgcccgggcgcccgctcga 1
>gb|AJ500185.1|AJ500185 AJ500185 MTGIM Medicago truncatula cDNA clone mtgmacc120013f07,
           mRNA sequence
          Length = 557

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           |||||||||||||| |||||||||
Sbjct: 24  gtacctgcccgggcagccgctcga 1
>gb|AJ499470.1|AJ499470 AJ499470 MTGIM Medicago truncatula cDNA clone mtgmacc120004f05,
           mRNA sequence
          Length = 128

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||||||| ||||
Sbjct: 24  gtacctgcccgggcggccgttcga 1
>gb|AJ499829.1|AJ499829 AJ499829 MTGIM Medicago truncatula cDNA clone mtgmacc120009a05,
           mRNA sequence
          Length = 298

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 774 gtacctgcccgggcggccgctcga 797
           ||||||||||||||| ||||||||
Sbjct: 24  gtacctgcccgggcgcccgctcga 1
>gb|AJ499868.1|AJ499868 AJ499868 MTGIM Medicago truncatula cDNA clone mtgmacc120009e06,
           mRNA sequence
          Length = 363

 Score = 40.1 bits (20), Expect = 0.28
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Minus

                                       
Query: 770 acaggtacctgcccgggcggccgctcga 797
           |||||||||||||| |||||||||||||
Sbjct: 27  acaggtacctgccc-ggcggccgctcga 1
  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 226,574
Number of Sequences: 392609
Number of extensions: 226574
Number of successful extensions: 16304
Number of sequences better than  0.5: 26
Number of HSP's better than  0.5 without gapping: 25
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 16272
Number of HSP's gapped (non-prelim): 32
length of query: 798
length of database: 441,732,993
effective HSP length: 20
effective length of query: 778
effective length of database: 433,880,813
effective search space: 337559272514
effective search space used: 337559272514
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)