BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 5704580.2.1
(721 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW329423.2|AW329423 N200658e rootphos(-) Medicago trunca... 90 3e-016
gb|BI311789.1|BI311789 EST5313539 GESD Medicago truncatula ... 90 3e-016
gb|CX539845.1|CX539845 s13dNF0HG12GS088_462962 Germinating ... 90 3e-016
emb|CR317587.1| mte1-42K1RM1 BAC end, cultivar Jemalong A17... 70 3e-010
gb|AC119419.9| Medicago truncatula clone mth2-6b12, complet... 70 3e-010
gb|AC127674.21| Medicago truncatula clone mth2-20a12, WORKI... 70 3e-010
emb|CR341936.1| mte1-74B3RM1 BAC end, cultivar Jemalong A17... 46 0.004
gb|BF518932.1|BF518932 EST456464 DSIL Medicago truncatula c... 46 0.004
gb|AC119414.51| Medicago truncatula clone mth2-23d7, comple... 40 0.25
>gb|AW329423.2|AW329423 N200658e rootphos(-) Medicago truncatula cDNA clone MHRP-19H10,
mRNA sequence
Length = 672
Score = 89.7 bits (45), Expect = 3e-016
Identities = 156/193 (80%)
Strand = Plus / Minus
Query: 319 ccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttggcttcc 378
||||| ||||| || || || ||||| |||||||| ||||||| ||||||||||| |||
Sbjct: 229 ccatcaacaagagaattttcatatatgtctttgcactcttgtatgacctccttggcatcc 170
Query: 379 ttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcgggcaatca 438
|| ||||| ||||| || | | ||||| || | || ||||||||||||||| |||
Sbjct: 169 ttccgaggaattccttctcgtagaccaacaagtttctcaacaacctcaggcgggcagtca 110
Query: 439 ggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctcagctgaa 498
||||||||||| |||||||| || || ||||| |||||| |||||| ||||| ||||||
Sbjct: 109 ggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggctctccgctgaa 50
Query: 499 gctagctccctca 511
|| || |||||||
Sbjct: 49 gcaagttccctca 37
>gb|BI311789.1|BI311789 EST5313539 GESD Medicago truncatula cDNA clone pGESD15O10 5' end,
mRNA sequence
Length = 688
Score = 89.7 bits (45), Expect = 3e-016
Identities = 156/193 (80%)
Strand = Plus / Minus
Query: 319 ccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttggcttcc 378
||||| ||||| || || || ||||| |||||||| ||||||| ||||||||||| |||
Sbjct: 536 ccatcaacaagagaattttcatatatgtctttgcactcttgtatgacctccttggcatcc 477
Query: 379 ttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcgggcaatca 438
|| ||||| ||||| || | | ||||| || | || ||||||||||||||| |||
Sbjct: 476 ttccgaggaattccttctcgtagaccaacaagtttctcaacaacctcaggcgggcagtca 417
Query: 439 ggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctcagctgaa 498
||||||||||| |||||||| || || ||||| |||||| |||||| ||||| ||||||
Sbjct: 416 ggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggctctccgctgaa 357
Query: 499 gctagctccctca 511
|| || |||||||
Sbjct: 356 gcaagttccctca 344
>gb|CX539845.1|CX539845 s13dNF0HG12GS088_462962 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 636
Score = 89.7 bits (45), Expect = 3e-016
Identities = 156/193 (80%)
Strand = Plus / Minus
Query: 319 ccatccacaagcgagttctcgtatatctctttgcattcttgtacaacctccttggcttcc 378
||||| ||||| || || || ||||| |||||||| ||||||| ||||||||||| |||
Sbjct: 538 ccatcaacaagagaattttcatatatgtctttgcactcttgtatgacctccttggcatcc 479
Query: 379 ttttttggaatgccttcccgcattgccacaagcttataaaaaacctcaggcgggcaatca 438
|| ||||| ||||| || | | ||||| || | || ||||||||||||||| |||
Sbjct: 478 ttccgaggaattccttctcgtagaccaacaagtttctcaacaacctcaggcgggcagtca 419
Query: 439 ggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaactctcagctgaa 498
||||||||||| |||||||| || || ||||| |||||| |||||| ||||| ||||||
Sbjct: 418 ggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggctctccgctgaa 359
Query: 499 gctagctccctca 511
|| || |||||||
Sbjct: 358 gcaagttccctca 346
>emb|CR317587.1| mte1-42K1RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 697
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
|||||| |||||||||||||| |||||||| || || ||||| |||||| |||||| ||
Sbjct: 530 cgggcagtcaggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggct 589
Query: 489 ctcagctgaagctagctccctca 511
||| |||||||| || |||||||
Sbjct: 590 ctccgctgaagcaagttccctca 612
>gb|AC119419.9| Medicago truncatula clone mth2-6b12, complete sequence
Length = 106395
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
|||||| |||||||||||||| |||||||| || || ||||| |||||| |||||| ||
Sbjct: 25582 cgggcagtcaggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggct 25523
Query: 489 ctcagctgaagctagctccctca 511
||| |||||||| || |||||||
Sbjct: 25522 ctccgctgaagcaagttccctca 25500
Score = 42.1 bits (21), Expect = 0.064
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 554 tgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatcg 613
|||| ||||| || ||||| ||||| | ||||| ||||||| ||||||| || || |
Sbjct: 25334 tgatatgttctctaaagaagtccatgatgacctcctcatctagtctcatccgttcaatag 25275
Query: 614 tttcttcttttatgtagtttttctg 638
||||||| || ||||||||||||||
Sbjct: 25274 tttcttccttgatgtagtttttctg 25250
>gb|AC127674.21| Medicago truncatula clone mth2-20a12, WORKING DRAFT SEQUENCE, 6
unordered pieces
Length = 126913
Score = 69.9 bits (35), Expect = 3e-010
Identities = 71/83 (85%)
Strand = Plus / Minus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaaagctatccaaact 488
|||||| |||||||||||||| |||||||| || || ||||| |||||| |||||| ||
Sbjct: 37265 cgggcagtcaggttgatgttcgagtatatttgtatagatgagtgtaaaggtatccaggct 37206
Query: 489 ctcagctgaagctagctccctca 511
||| |||||||| || |||||||
Sbjct: 37205 ctccgctgaagcaagttccctca 37183
Score = 42.1 bits (21), Expect = 0.064
Identities = 69/85 (81%)
Strand = Plus / Minus
Query: 554 tgatgtgttccctgaagaaatccataagcacctcttcatctaacctcatcctctctatcg 613
|||| ||||| || ||||| ||||| | ||||| ||||||| ||||||| || || |
Sbjct: 37017 tgatatgttctctaaagaagtccatgatgacctcctcatctagtctcatccgttcaatag 36958
Query: 614 tttcttcttttatgtagtttttctg 638
||||||| || ||||||||||||||
Sbjct: 36957 tttcttccttgatgtagtttttctg 36933
>emb|CR341936.1| mte1-74B3RM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 576
Score = 46.1 bits (23), Expect = 0.004
Identities = 41/47 (87%)
Strand = Plus / Plus
Query: 429 cgggcaatcaggttgatgttccagtatattagtgtaaatgagagtaa 475
|||||| |||||||||||||| |||||||| || || ||||| ||||
Sbjct: 530 cgggcagtcaggttgatgttcgagtatatttgtatagatgagtgtaa 576
>gb|BF518932.1|BF518932 EST456464 DSIL Medicago truncatula cDNA clone pDSIL-19M14, mRNA
sequence
Length = 593
Score = 46.1 bits (23), Expect = 0.004
Identities = 89/111 (80%)
Strand = Plus / Minus
Query: 528 cactctgctttcaacttttgtcacgttgatgtgttccctgaagaaatccataagcacctc 587
||||||| |||||||||| | || |||| ||||| || ||||| ||||| | |||||
Sbjct: 580 cactctgttttcaactttagaaacactgatatgttctctaaagaagtccatgatgacctc 521
Query: 588 ttcatctaacctcatcctctctatcgtttcttcttttatgtagtttttctg 638
||||||| ||||||| || || |||||||| || ||||||||||||||
Sbjct: 520 ctcatctagtctcatccgttcaatagtttcttccttgatgtagtttttctg 470
>gb|AC119414.51| Medicago truncatula clone mth2-23d7, complete sequence
Length = 159149
Score = 40.1 bits (20), Expect = 0.25
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 18 ttttattgaataaattacat 37
||||||||||||||||||||
Sbjct: 57980 ttttattgaataaattacat 57961
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 232,828
Number of Sequences: 392609
Number of extensions: 232828
Number of successful extensions: 19166
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 19125
Number of HSP's gapped (non-prelim): 41
length of query: 721
length of database: 441,732,993
effective HSP length: 19
effective length of query: 702
effective length of database: 434,273,422
effective search space: 304859942244
effective search space used: 304859942244
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)