BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4580138.2.1
(1484 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC152936.21| Medicago truncatula clone mth2-47n14, compl... 103 4e-020
gb|AC146755.23| Medicago truncatula clone mth2-15i15, compl... 60 6e-007
gb|CG952846.1|CG952846 MBEIH35TRB mth2 Medicago truncatula ... 58 2e-006
emb|CR508720.1| mth4-7C18FM1 BAC end, cultivar Jemalong A17... 50 5e-004
>gb|AC152936.21| Medicago truncatula clone mth2-47n14, complete sequence
Length = 130801
Score = 103 bits (52), Expect = 4e-020
Identities = 226/284 (79%)
Strand = Plus / Minus
Query: 943 cggaacacaatgaaagtatccacatcggcatgaagcaggagttcactatttgtgaagatg 1002
||||||||||||||||||||||||| |||||| | ||| | |||||||| || || |
Sbjct: 69851 cggaacacaatgaaagtatccacattggcatgtaacagcaactcactattagtaaacagc 69792
Query: 1003 gagatgtagaacatcacagcagcaggtaagaacttccacattgtcctcaagttaagtcca 1062
|| | || || ||||||||||| ||||| ||| |||||||||| |||| | ||| |
Sbjct: 69791 gacagataaaaaatcacagcagccggtaaaaaccgccacattgtcatcaaatcaagctta 69732
Query: 1063 tcgtgctcaatgagcttgagctgtccacataggagaactccagcaacactagtgaaatac 1122
|| ||||| | | ||||||| ||||||||| | |||||||||| ||||||||||||||
Sbjct: 69731 tcatgctcgacaaccttgagccatccacatagcaaaactccagcagcactagtgaaatac 69672
Query: 1123 tgcagagctgtcagggctccaggatatggaaatttcatgattgcccatttgttgatgatc 1182
|| | || || || || || || || || |||||||||| |||||||||||||| ||
Sbjct: 69671 tgtaacgcggtaagcgcgcccgggtaagggaatttcatgacagcccatttgttgataatt 69612
Query: 1183 gagagcagcgacgctgataaacaatacccagcagccacaccata 1226
|| | || ||||| ||||||||||| |||||||| ||||||||
Sbjct: 69611 gacaacaaagacgcagataaacaataaccagcagcaacaccata 69568
Score = 44.1 bits (22), Expect = 0.034
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 424 tgcttgtcccagataagcaaattaatcacaacagttaggagcttgttaactatgccaagc 483
||||| ||||| || | ||||||||||| ||| || | | |||||| ||||| |||||
Sbjct: 70370 tgcttatcccatatcaccaaattaatcataactgtcaacaacttgttcactataccaaga 70311
Query: 484 actgtgaacccagtagcagaaatagc 509
|| || || |||||||||||||||||
Sbjct: 70310 acagtaaatccagtagcagaaatagc 70285
>gb|AC146755.23| Medicago truncatula clone mth2-15i15, complete sequence
Length = 108159
Score = 60.0 bits (30), Expect = 6e-007
Identities = 120/150 (80%)
Strand = Plus / Plus
Query: 1077 cttgagctgtccacataggagaactccagcaacactagtgaaatactgcagagctgtcag 1136
||||||| ||||||||| | |||||| ||| |||| ||||| ||||| | || || ||
Sbjct: 73339 cttgagccatccacatagcaaaactccggcagcactggtgaagtactgtaacgcagtaag 73398
Query: 1137 ggctccaggatatggaaatttcatgattgcccatttgttgatgatcgagagcagcgacgc 1196
|| || || || |||||||||||||| |||||||||||||| || || |||| || ||
Sbjct: 73399 cgcacccgggtaaggaaatttcatgatagcccatttgttgataattgacagcaaagatgc 73458
Query: 1197 tgataaacaatacccagcagccacaccata 1226
|||||||| || |||||||| || |||||
Sbjct: 73459 agataaacagtaaccagcagcaacgccata 73488
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 934 acagcagagcggaacacaatgaaagtatccacatcggcatg 974
||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 73196 acagccgatcggaacacaatgaaagtatctacattggcatg 73236
>gb|CG952846.1|CG952846 MBEIH35TRB mth2 Medicago truncatula genomic clone 61F22, DNA
sequence
Length = 1012
Score = 58.0 bits (29), Expect = 2e-006
Identities = 38/41 (92%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacatcggcatg 974
||||| || ||||||||||||||||||||||||| ||||||
Sbjct: 122 acagccgatcggaacacaatgaaagtatccacattggcatg 82
Score = 44.1 bits (22), Expect = 0.034
Identities = 70/86 (81%)
Strand = Plus / Minus
Query: 424 tgcttgtcccagataagcaaattaatcacaacagttaggagcttgttaactatgccaagc 483
||||| ||||| || | ||||||||||| ||| || | | |||||| ||||| |||||
Sbjct: 632 tgcttatcccatatcaccaaattaatcataactgtcaacaacttgttcactataccaaga 573
Query: 484 actgtgaacccagtagcagaaatagc 509
|| || || |||||||||||||||||
Sbjct: 572 acagtaaatccagtagcagaaatagc 547
>emb|CR508720.1| mth4-7C18FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
genomic survey sequence
Length = 530
Score = 50.1 bits (25), Expect = 5e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 934 acagcagagcggaacacaatgaaagtatccacatcggcatg 974
||||| || |||||||||||||||||||| |||| ||||||
Sbjct: 127 acagccgatcggaacacaatgaaagtatctacattggcatg 87
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 349,775
Number of Sequences: 392609
Number of extensions: 349775
Number of successful extensions: 26017
Number of sequences better than 0.5: 4
Number of HSP's better than 0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 25995
Number of HSP's gapped (non-prelim): 22
length of query: 1484
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1464
effective length of database: 433,880,813
effective search space: 635201510232
effective search space used: 635201510232
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)