BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4574602.2.1
         (1248 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG945338.1|CG945338  MBEDQ77TRC mth2 Medicago truncatula ...    40   0.44 
emb|CR483040.1|  mth2-150I15RM1 BAC end, cultivar Jemalong A...    40   0.44 
gb|AL386384.1|AL386384  MtBC34C12F1 MtBC Medicago truncatula...    40   0.44 
gb|AC146568.11|  Medicago truncatula clone mth2-101o18, comp...    40   0.44 

>gb|CG945338.1|CG945338 MBEDQ77TRC mth2 Medicago truncatula genomic clone 34M9, DNA
           sequence
          Length = 928

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 tatatatatatgcatggcta 242
           ||||||||||||||||||||
Sbjct: 486 tatatatatatgcatggcta 467



>emb|CR483040.1| mth2-150I15RM1 BAC end, cultivar Jemalong A17 of Medicago
           truncatula, genomic survey sequence
          Length = 677

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 223 tatatatatatgcatggcta 242
           ||||||||||||||||||||
Sbjct: 491 tatatatatatgcatggcta 472



>gb|AL386384.1|AL386384 MtBC34C12F1 MtBC Medicago truncatula cDNA clone MtBC34C12 T3, mRNA
            sequence
          Length = 428

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 1040 tgccttcgttgccgttctggccccagta 1067
            |||| ||||| |||||||||||||||||
Sbjct: 152  tgccctcgtttccgttctggccccagta 125



>gb|AC146568.11| Medicago truncatula clone mth2-101o18, complete sequence
          Length = 129921

 Score = 40.1 bits (20), Expect = 0.44
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 1040  tgccttcgttgccgttctggccccagta 1067
             |||| ||||| |||||||||||||||||
Sbjct: 44965 tgccctcgtttccgttctggccccagta 44992



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 462,417
Number of Sequences: 392609
Number of extensions: 462417
Number of successful extensions: 14394
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14386
Number of HSP's gapped (non-prelim): 8
length of query: 1248
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1228
effective length of database: 433,880,813
effective search space: 532805638364
effective search space used: 532805638364
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)