BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4573929.2.1
(691 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BQ144134.1|BQ144134 NF046D05DT1F1046 Drought Medicago tr... 50 3e-004
gb|AL369795.1|AL369795 MtBA33E01R1 MtBA Medicago truncatula... 42 0.061
gb|AL385904.1|AL385904 MtBC31D08F1 MtBC Medicago truncatula... 42 0.061
gb|AL385905.1|AL385905 MtBC31D08R1 MtBC Medicago truncatula... 42 0.061
gb|AW695008.2|AW695008 NF082D09ST1F1077 Developing stem Med... 42 0.061
gb|BG588912.1|BG588912 EST490721 MHRP- Medicago truncatula ... 42 0.061
gb|BQ147135.1|BQ147135 NF034A07FL1F1052 Developing flower M... 42 0.061
gb|BQ147412.1|BQ147412 NF040C12FL1F1097 Developing flower M... 42 0.061
gb|BQ148664.1|BQ148664 NF080C11FL1F1086 Developing flower M... 42 0.061
gb|BQ148861.1|BQ148861 NF083D01FL1F1013 Developing flower M... 42 0.061
gb|BQ153640.1|BQ153640 NF040G08IR1F1067 Irradiated Medicago... 42 0.061
gb|AJ498409.1|AJ498409 AJ498409 MTPOSE Medicago truncatula ... 42 0.061
gb|AC146785.12| Medicago truncatula clone mth2-4h4, complet... 42 0.061
emb|CR962131.1| Medicago truncatula chromosome 5 clone mth2... 42 0.061
gb|CG963704.1|CG963704 MBEDX48TRC mth2 Medicago truncatula ... 40 0.24
gb|BE942663.1|BE942663 EST422242 MGHG Medicago truncatula c... 40 0.24
gb|BE942668.1|BE942668 EST422247 MGHG Medicago truncatula c... 40 0.24
gb|BE942669.1|BE942669 EST422248 MGHG Medicago truncatula c... 40 0.24
gb|BG451975.1|BG451975 NF043G10DT1F1081 Drought Medicago tr... 40 0.24
gb|BQ148203.1|BQ148203 NF062H02FL1F1028 Developing flower M... 40 0.24
gb|CA990695.1|CA990695 EST644203 GESD Medicago truncatula c... 40 0.24
gb|CB894215.1|CB894215 EST647007 HOGA Medicago truncatula c... 40 0.24
>gb|BQ144134.1|BQ144134 NF046D05DT1F1046 Drought Medicago truncatula cDNA clone NF046D05DT
5', mRNA sequence
Length = 844
Score = 50.1 bits (25), Expect = 3e-004
Identities = 46/53 (86%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || ||| | |||||||||||||| |||| |||||| |||||
Sbjct: 222 tggaaggccaaatatggggtagaggagatgtgcagggatcagtggaattgggc 274
>gb|AL369795.1|AL369795 MtBA33E01R1 MtBA Medicago truncatula cDNA clone MtBA33E01 T7, mRNA
sequence
Length = 541
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 120 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 172
>gb|AL385904.1|AL385904 MtBC31D08F1 MtBC Medicago truncatula cDNA clone MtBC31D08 T3, mRNA
sequence
Length = 394
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 30 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 82
>gb|AL385905.1|AL385905 MtBC31D08R1 MtBC Medicago truncatula cDNA clone MtBC31D08 T7, mRNA
sequence
Length = 396
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 30 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 82
>gb|AW695008.2|AW695008 NF082D09ST1F1077 Developing stem Medicago truncatula cDNA clone
NF082D09ST 5', mRNA sequence
Length = 584
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Minus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 366 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 314
>gb|BG588912.1|BG588912 EST490721 MHRP- Medicago truncatula cDNA clone pMHRP-57N2, mRNA
sequence
Length = 679
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 302 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 354
>gb|BQ147135.1|BQ147135 NF034A07FL1F1052 Developing flower Medicago truncatula cDNA clone
NF034A07FL 5', mRNA sequence
Length = 567
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 246 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 298
>gb|BQ147412.1|BQ147412 NF040C12FL1F1097 Developing flower Medicago truncatula cDNA clone
NF040C12FL 5', mRNA sequence
Length = 586
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 206 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 258
>gb|BQ148664.1|BQ148664 NF080C11FL1F1086 Developing flower Medicago truncatula cDNA clone
NF080C11FL 5', mRNA sequence
Length = 635
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 329 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 381
>gb|BQ148861.1|BQ148861 NF083D01FL1F1013 Developing flower Medicago truncatula cDNA clone
NF083D01FL 5', mRNA sequence
Length = 811
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 216 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 268
>gb|BQ153640.1|BQ153640 NF040G08IR1F1067 Irradiated Medicago truncatula cDNA clone
NF040G08IR 5', mRNA sequence
Length = 803
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 246 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 298
>gb|AJ498409.1|AJ498409 AJ498409 MTPOSE Medicago truncatula cDNA clone mt--acc955204e03,
mRNA sequence
Length = 385
Score = 42.1 bits (21), Expect = 0.061
Identities = 45/53 (84%)
Strand = Plus / Plus
Query: 268 tggaaggccaagtacgggatcgaggagatgtgcagagatctgtggaactgggc 320
||||||||||| || || | |||||||||||||| |||| |||||| |||||
Sbjct: 41 tggaaggccaaatatggtgtagaggagatgtgcagggatcagtggaattgggc 93
>gb|AC146785.12| Medicago truncatula clone mth2-4h4, complete sequence
Length = 149005
Score = 42.1 bits (21), Expect = 0.061
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 473 taactcatcaatcatgcatacataa 497
|||||||||||||||||||| ||||
Sbjct: 130467 taactcatcaatcatgcataaataa 130443
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 442 taactcatcaatcatgcata 461
||||||||||||||||||||
Sbjct: 130467 taactcatcaatcatgcata 130448
>emb|CR962131.1| Medicago truncatula chromosome 5 clone mth2-69b10, WORKING DRAFT
SEQUENCE
Length = 116344
Score = 42.1 bits (21), Expect = 0.061
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 473 taactcatcaatcatgcatacataa 497
|||||||||||||||||||| ||||
Sbjct: 20925 taactcatcaatcatgcataaataa 20901
Score = 40.1 bits (20), Expect = 0.24
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 442 taactcatcaatcatgcata 461
||||||||||||||||||||
Sbjct: 20925 taactcatcaatcatgcata 20906
>gb|CG963704.1|CG963704 MBEDX48TRC mth2 Medicago truncatula genomic clone 35H24, DNA
sequence
Length = 723
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 289 gaggagatgtgcagagatctgtggaactgggc 320
|||||||||||||| |||| |||||| |||||
Sbjct: 157 gaggagatgtgcagggatcagtggaattgggc 188
>gb|BE942663.1|BE942663 EST422242 MGHG Medicago truncatula cDNA clone pMGHG-9G13, mRNA
sequence
Length = 551
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 321 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 380
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 381 agagcttttgagaaggcatctggaaagaaaat 412
>gb|BE942668.1|BE942668 EST422247 MGHG Medicago truncatula cDNA clone pMGHG-9G23, mRNA
sequence
Length = 630
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 324 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 383
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 384 agagcttttgagaaggcatctggaaagaaaat 415
>gb|BE942669.1|BE942669 EST422248 MGHG Medicago truncatula cDNA clone pMGHG-9I1, mRNA
sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 308 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 367
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 368 agagcttttgagaaggcatctggaaagaaaat 399
>gb|BG451975.1|BG451975 NF043G10DT1F1081 Drought Medicago truncatula cDNA clone NF043G10DT
5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 349 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 408
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 409 agagcttttgagaaggcatctggaaagaaaat 440
>gb|BQ148203.1|BQ148203 NF062H02FL1F1028 Developing flower Medicago truncatula cDNA clone
NF062H02FL 5', mRNA sequence
Length = 635
Score = 40.1 bits (20), Expect = 0.24
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 289 gaggagatgtgcagagatctgtggaactgggc 320
|||||||||||||| |||| |||||| |||||
Sbjct: 340 gaggagatgtgcagggatcagtggaattgggc 371
>gb|CA990695.1|CA990695 EST644203 GESD Medicago truncatula cDNA clone GESD-29H3, mRNA
sequence
Length = 697
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Minus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 602 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 543
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 542 agagcttttgagaaggcatctggaaagaaaat 511
>gb|CB894215.1|CB894215 EST647007 HOGA Medicago truncatula cDNA clone HOGA-30O14, mRNA
sequence
Length = 788
Score = 40.1 bits (20), Expect = 0.24
Identities = 74/92 (80%)
Strand = Plus / Plus
Query: 94 ataggctgtgaagtgtacaacttggggactggaaaggggacgtccgtgttggaaatggtg 153
||||| ||||| || || ||||||||||| |||||||| || || || ||||| |||||
Sbjct: 389 ataggttgtgacgtttataacttggggacaggaaagggaacatcagttttggagatggtt 448
Query: 154 gctgcattcgagaaggcttctgggaagaaaat 185
|| || |||||||| ||||| ||||||||
Sbjct: 449 agagcttttgagaaggcatctggaaagaaaat 480
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 132,773
Number of Sequences: 392609
Number of extensions: 132773
Number of successful extensions: 12010
Number of sequences better than 0.5: 22
Number of HSP's better than 0.5 without gapping: 16
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 11985
Number of HSP's gapped (non-prelim): 31
length of query: 691
length of database: 441,732,993
effective HSP length: 19
effective length of query: 672
effective length of database: 434,273,422
effective search space: 291831739584
effective search space used: 291831739584
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)