BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4534747.2.1
         (628 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC131455.5|  Medicago truncatula clone mth1-42h9, complet...    42   0.055
gb|AC124972.41|  Medicago truncatula clone mth2-24j4, comple...    42   0.055
gb|BQ165763.1|BQ165763  EST611632 KVKC Medicago truncatula c...    40   0.22 
gb|CX533662.1|CX533662  s13dNF0KC03MJ018_320475 Methyl Jasmo...    40   0.22 
gb|AC144517.7|  Medicago truncatula clone mth2-13k17, comple...    40   0.22 
gb|AC148482.10|  Medicago truncatula clone mth2-36j11, compl...    40   0.22 
gb|AC148526.24|  Medicago truncatula clone mth2-53k6, comple...    40   0.22 

>gb|AC131455.5| Medicago truncatula clone mth1-42h9, complete sequence
          Length = 96063

 Score = 42.1 bits (21), Expect = 0.055
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 551   tatttttaggttgtctatatatcat 575
             |||||| ||||||||||||||||||
Sbjct: 47593 tattttgaggttgtctatatatcat 47569



>gb|AC124972.41| Medicago truncatula clone mth2-24j4, complete sequence
          Length = 124069

 Score = 42.1 bits (21), Expect = 0.055
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 551    tatttttaggttgtctatatatcat 575
              |||||| ||||||||||||||||||
Sbjct: 106284 tattttgaggttgtctatatatcat 106308



>gb|BQ165763.1|BQ165763 EST611632 KVKC Medicago truncatula cDNA clone pKVKC-11E5, mRNA
           sequence
          Length = 668

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 56/68 (82%)
 Strand = Plus / Minus

                                                                       
Query: 89  acgcacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggac 148
           |||||||||||| | ||||| || ||| ||| |||||| || ||||| || || || |||
Sbjct: 589 acgcacgagtacttggcgcctgaaatcatcaaaggcgaaggtcacggcagtgctgtagac 530

                   
Query: 149 tggtggac 156
           ||||||||
Sbjct: 529 tggtggac 522



>gb|CX533662.1|CX533662 s13dNF0KC03MJ018_320475 Methyl Jasmonate-Elicited Root Cell
           Suspension Culture Medicago truncatula cDNA, mRNA
           sequence
          Length = 667

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 56/68 (82%)
 Strand = Plus / Plus

                                                                       
Query: 89  acgcacgagtacctcgcgccggagatcgtcagaggcgagggccacgggagcgcggtggac 148
           |||||||||||| | ||||| || ||| ||| |||||| || ||||| || || || |||
Sbjct: 590 acgcacgagtacttggcgcctgaaatcatcaaaggcgaaggtcacggcagtgctgtagac 649

                   
Query: 149 tggtggac 156
           ||||||||
Sbjct: 650 tggtggac 657



>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence
          Length = 107710

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 586   ttggcagacaaaaaatacaa 605
             ||||||||||||||||||||
Sbjct: 31878 ttggcagacaaaaaatacaa 31859



>gb|AC148482.10| Medicago truncatula clone mth2-36j11, complete sequence
          Length = 115873

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 595   aaaaaatacaagtcattttt 614
             ||||||||||||||||||||
Sbjct: 88909 aaaaaatacaagtcattttt 88928



>gb|AC148526.24| Medicago truncatula clone mth2-53k6, complete sequence
          Length = 89055

 Score = 40.1 bits (20), Expect = 0.22
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 595   aaaaaatacaagtcattttt 614
             ||||||||||||||||||||
Sbjct: 62822 aaaaaatacaagtcattttt 62803



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 144,710
Number of Sequences: 392609
Number of extensions: 144710
Number of successful extensions: 12927
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12903
Number of HSP's gapped (non-prelim): 24
length of query: 628
length of database: 441,732,993
effective HSP length: 19
effective length of query: 609
effective length of database: 434,273,422
effective search space: 264472513998
effective search space used: 264472513998
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)