BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 4424417.2.1
(1137 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC145109.42| Medicago truncatula clone mth2-25f20, WORKI... 46 0.006
emb|CR341603.1| mte1-74A21FM1 BAC end, cultivar Jemalong A1... 40 0.40
gb|AC158377.1| Medicago truncatula chromosome 2 clone mth2-... 40 0.40
>gb|AC145109.42| Medicago truncatula clone mth2-25f20, WORKING DRAFT SEQUENCE, 2 ordered
pieces
Length = 118109
Score = 46.1 bits (23), Expect = 0.006
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 843 attatttaagttttttaatgtatatttttca 873
||||| |||||||||| ||||||||||||||
Sbjct: 43216 attatataagtttttttatgtatatttttca 43246
>emb|CR341603.1| mte1-74A21FM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 646
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 838 tataaattatttaagttttt 857
||||||||||||||||||||
Sbjct: 497 tataaattatttaagttttt 516
>gb|AC158377.1| Medicago truncatula chromosome 2 clone mth2-74a13, *** SEQUENCING IN
PROGRESS ***, 12 unordered pieces
Length = 132622
Score = 40.1 bits (20), Expect = 0.40
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 794 ttttccctctatcatttggt 813
||||||||||||||||||||
Sbjct: 35570 ttttccctctatcatttggt 35551
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 318,353
Number of Sequences: 392609
Number of extensions: 318353
Number of successful extensions: 27257
Number of sequences better than 0.5: 3
Number of HSP's better than 0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 27230
Number of HSP's gapped (non-prelim): 27
length of query: 1137
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1117
effective length of database: 433,880,813
effective search space: 484644868121
effective search space used: 484644868121
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)