BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 4005867.2.1
         (1967 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC147774.3|  Medicago truncatula chromosome 2 BAC clone m...    48   0.003
gb|BF636399.1|BF636399  NF090A05DT1F1036 Drought Medicago tr...    46   0.011
gb|CX529337.1|CX529337  s13dNF02D12MJ094_244730 Methyl Jasmo...    46   0.011
gb|AC144563.14|  Medicago truncatula clone mth2-5c24, comple...    42   0.18 
emb|CT030158.4|  M.truncatula DNA sequence from clone MTH2-4...    42   0.18 
gb|AC166707.9|  Medicago truncatula strain cultivar Jemalong...    42   0.18 
gb|AC146755.23|  Medicago truncatula clone mth2-15i15, compl...    42   0.18 

>gb|AC147774.3| Medicago truncatula chromosome 2 BAC clone mth2-10c8, complete sequence
          Length = 110758

 Score = 48.1 bits (24), Expect = 0.003
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                         
Query: 1744  cacacacgctcgcgcgcgcgcacacaca 1771
             ||||||||| ||||||||||||||||||
Sbjct: 33627 cacacacgcgcgcgcgcgcgcacacaca 33654



>gb|BF636399.1|BF636399 NF090A05DT1F1036 Drought Medicago truncatula cDNA clone NF090A05DT
           5', mRNA sequence
          Length = 555

 Score = 46.1 bits (23), Expect = 0.011
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 882 cgtcatggtccccaaggacaagg 904
           |||||||||||||||||||||||
Sbjct: 122 cgtcatggtccccaaggacaagg 144



>gb|CX529337.1|CX529337 s13dNF02D12MJ094_244730 Methyl Jasmonate-Elicited Root Cell
            Suspension Culture Medicago truncatula cDNA, mRNA
            sequence
          Length = 507

 Score = 46.1 bits (23), Expect = 0.011
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                   
Query: 1753 tcgcgcgcgcgcacacacatgtt 1775
            |||||||||||||||||||||||
Sbjct: 502  tcgcgcgcgcgcacacacatgtt 480



>gb|AC144563.14| Medicago truncatula clone mth2-5c24, complete sequence
          Length = 111375

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 42/49 (85%)
 Strand = Plus / Plus

                                                              
Query: 1166  ggcagttcttccgcaactgcgtggtctccggcaccatcgacttcatctt 1214
             |||| |||| ||||||||| ||  ||||||| ||||| |||||||||||
Sbjct: 32795 ggcaattctaccgcaactgtgttatctccggtaccattgacttcatctt 32843



>emb|CT030158.4| M.truncatula DNA sequence from clone MTH2-49E10 on chromosome 3,
             complete sequence
          Length = 122591

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 1754  cgcgcgcgcgcacacacatgt 1774
             |||||||||||||||||||||
Sbjct: 82765 cgcgcgcgcgcacacacatgt 82745



>gb|AC166707.9| Medicago truncatula strain cultivar Jemalong A17 clone mte1-13o17,
             WORKING DRAFT SEQUENCE
          Length = 123664

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 1747  acacgctcgcgcgcgcgcacacaca 1771
             |||||| ||||||||||||||||||
Sbjct: 85885 acacgcacgcgcgcgcgcacacaca 85909



>gb|AC146755.23| Medicago truncatula clone mth2-15i15, complete sequence
          Length = 108159

 Score = 42.1 bits (21), Expect = 0.18
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 1743   gcacacacgctcgcgcgcgcgcacacaca 1771
              |||||||| | ||||||||||||||||||
Sbjct: 101386 gcacacacacgcgcgcgcgcgcacacaca 101414



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 231,489
Number of Sequences: 392609
Number of extensions: 231489
Number of successful extensions: 18331
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 18296
Number of HSP's gapped (non-prelim): 34
length of query: 1967
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1947
effective length of database: 433,880,813
effective search space: 844765942911
effective search space used: 844765942911
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 21 (42.1 bits)