BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3848939.2.1
(952 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AC149494.4| Medicago truncatula clone mth2-116m7, comple... 42 0.084
gb|AC152177.23| Medicago truncatula clone mth2-65h3, WORKIN... 42 0.084
gb|BG447829.1|BG447829 NF104F10EC1F1089 Elicited cell cultu... 40 0.33
gb|BG647266.1|BG647266 EST508875 HOGA Medicago truncatula c... 40 0.33
gb|BQ136433.1|BQ136433 NF065A02EC1F1008 Elicited cell cultu... 40 0.33
gb|DW015990.1|DW015990 EST1224951 MTY Medicago truncatula c... 40 0.33
gb|AC139744.26| Medicago truncatula clone mth2-31b18, WORKI... 40 0.33
gb|AC145328.23| Medicago truncatula clone mth2-21m18, WORKI... 40 0.33
>gb|AC149494.4| Medicago truncatula clone mth2-116m7, complete sequence
Length = 95710
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 643 atatataacacaaacatatac 663
|||||||||||||||||||||
Sbjct: 41916 atatataacacaaacatatac 41896
>gb|AC152177.23| Medicago truncatula clone mth2-65h3, WORKING DRAFT SEQUENCE, 17 unordered
pieces
Length = 257180
Score = 42.1 bits (21), Expect = 0.084
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 643 atatataacacaaacatatac 663
|||||||||||||||||||||
Sbjct: 130034 atatataacacaaacatatac 130054
>gb|BG447829.1|BG447829 NF104F10EC1F1089 Elicited cell culture Medicago truncatula cDNA
clone NF104F10EC 5', mRNA sequence
Length = 508
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gtcgtcgtcgtcgtcatcgc 109
||||||||||||||||||||
Sbjct: 116 gtcgtcgtcgtcgtcatcgc 135
>gb|BG647266.1|BG647266 EST508875 HOGA Medicago truncatula cDNA clone pHOGA-16K1 5' end,
mRNA sequence
Length = 446
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gtcgtcgtcgtcgtcatcgc 109
||||||||||||||||||||
Sbjct: 98 gtcgtcgtcgtcgtcatcgc 117
>gb|BQ136433.1|BQ136433 NF065A02EC1F1008 Elicited cell culture Medicago truncatula cDNA
clone NF065A02EC 5', mRNA sequence
Length = 778
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gtcgtcgtcgtcgtcatcgc 109
||||||||||||||||||||
Sbjct: 238 gtcgtcgtcgtcgtcatcgc 257
>gb|DW015990.1|DW015990 EST1224951 MTY Medicago truncatula cDNA clone MTYAB95, mRNA
sequence
Length = 514
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 90 gtcgtcgtcgtcgtcatcgc 109
||||||||||||||||||||
Sbjct: 143 gtcgtcgtcgtcgtcatcgc 162
>gb|AC139744.26| Medicago truncatula clone mth2-31b18, WORKING DRAFT SEQUENCE, 13
ordered pieces
Length = 106227
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 90 gtcgtcgtcgtcgtcatcgc 109
||||||||||||||||||||
Sbjct: 84553 gtcgtcgtcgtcgtcatcgc 84534
>gb|AC145328.23| Medicago truncatula clone mth2-21m18, WORKING DRAFT SEQUENCE
Length = 95800
Score = 40.1 bits (20), Expect = 0.33
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 630 tatatatacatccatatata 649
||||||||||||||||||||
Sbjct: 37621 tatatatacatccatatata 37640
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 186,787
Number of Sequences: 392609
Number of extensions: 186787
Number of successful extensions: 14816
Number of sequences better than 0.5: 8
Number of HSP's better than 0.5 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 14772
Number of HSP's gapped (non-prelim): 44
length of query: 952
length of database: 441,732,993
effective HSP length: 20
effective length of query: 932
effective length of database: 433,880,813
effective search space: 404376917716
effective search space used: 404376917716
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)