BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3748501.2.2
(993 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|CG950808.1|CG950808 MBEJF69TF mth2 Medicago truncatula g... 42 0.088
gb|AW559238.1|AW559238 EST306074 DSIR Medicago truncatula c... 42 0.088
gb|BE248356.1|BE248356 NF003F12DT1F1095 Drought Medicago tr... 42 0.088
gb|BF519596.1|BF519596 EST457060 DSIL Medicago truncatula c... 42 0.088
gb|BF632531.1|BF632531 NF027A09DT1F1066 Drought Medicago tr... 42 0.088
gb|CX526647.1|CX526647 s13dNF25B06AT057_513806 Aphid-Infect... 42 0.088
gb|CX541456.1|CX541456 s13dNF44A04GS033_466214 Germinating ... 42 0.088
gb|DW015855.1|DW015855 EST1224816 MTY Medicago truncatula c... 42 0.088
gb|DW018234.1|DW018234 EST1227195 MTY Medicago truncatula c... 42 0.088
gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-... 40 0.35
>gb|CG950808.1|CG950808 MBEJF69TF mth2 Medicago truncatula genomic clone 67K18, DNA
sequence
Length = 877
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 700 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 759
Query: 267 aggag 271
|||||
Sbjct: 760 aggag 764
>gb|AW559238.1|AW559238 EST306074 DSIR Medicago truncatula cDNA clone pDSIR-7F8, mRNA
sequence
Length = 672
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 250 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 309
Query: 267 aggag 271
|||||
Sbjct: 310 aggag 314
>gb|BE248356.1|BE248356 NF003F12DT1F1095 Drought Medicago truncatula cDNA clone NF003F12DT
5', mRNA sequence
Length = 642
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 267 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 326
Query: 267 aggag 271
|||||
Sbjct: 327 aggag 331
>gb|BF519596.1|BF519596 EST457060 DSIL Medicago truncatula cDNA clone pDSIL-21M19, mRNA
sequence
Length = 450
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 316 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 375
Query: 267 aggag 271
|||||
Sbjct: 376 aggag 380
>gb|BF632531.1|BF632531 NF027A09DT1F1066 Drought Medicago truncatula cDNA clone NF027A09DT
5', mRNA sequence
Length = 562
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 267 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 326
Query: 267 aggag 271
|||||
Sbjct: 327 aggag 331
>gb|CX526647.1|CX526647 s13dNF25B06AT057_513806 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 618
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 291 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 350
Query: 267 aggag 271
|||||
Sbjct: 351 aggag 355
>gb|CX541456.1|CX541456 s13dNF44A04GS033_466214 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 549
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 283 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 342
Query: 267 aggag 271
|||||
Sbjct: 343 aggag 347
>gb|DW015855.1|DW015855 EST1224816 MTY Medicago truncatula cDNA clone MTYAA49, mRNA
sequence
Length = 741
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 363 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 422
Query: 267 aggag 271
|||||
Sbjct: 423 aggag 427
>gb|DW018234.1|DW018234 EST1227195 MTY Medicago truncatula cDNA clone MTYB403, mRNA
sequence
Length = 836
Score = 42.1 bits (21), Expect = 0.088
Identities = 54/65 (83%)
Strand = Plus / Plus
Query: 207 gcagctactcttccatggacggtgtgctgtactgcaagacccacttcgagcagctcttca 266
||||||| || || ||||| ||||| || ||||| ||| | || || |||||||||||||
Sbjct: 375 gcagctattcatcaatggaaggtgttctttactgtaagcctcattttgagcagctcttca 434
Query: 267 aggag 271
|||||
Sbjct: 435 aggag 439
>gb|AC173290.1| Medicago truncatula chromosome 2 clone mth2-45a9, *** SEQUENCING IN
PROGRESS ***, 7 unordered pieces
Length = 125396
Score = 40.1 bits (20), Expect = 0.35
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 958 atatattgttcctaacaatg 977
||||||||||||||||||||
Sbjct: 119188 atatattgttcctaacaatg 119207
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 137,145
Number of Sequences: 392609
Number of extensions: 137145
Number of successful extensions: 10380
Number of sequences better than 0.5: 10
Number of HSP's better than 0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 10368
Number of HSP's gapped (non-prelim): 12
length of query: 993
length of database: 441,732,993
effective HSP length: 20
effective length of query: 973
effective length of database: 433,880,813
effective search space: 422166031049
effective search space used: 422166031049
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)