BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3712967.2.1
(571 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BF644787.1|BF644787 NF016A03EC1F1020 Elicited cell cultu... 44 0.013
gb|CG930301.1|CG930301 MBECU73TF mth2 Medicago truncatula g... 42 0.050
gb|BG453640.1|BG453640 NF100A03LF1F1018 Developing leaf Med... 42 0.050
gb|BG647317.1|BG647317 EST508936 HOGA Medicago truncatula c... 42 0.050
gb|BM779678.1|BM779678 EST590254 KV2 Medicago truncatula cD... 42 0.050
gb|BM780055.1|BM780055 EST590631 KV2 Medicago truncatula cD... 42 0.050
gb|CX532396.1|CX532396 s13dNF61C07MJ050_271085 Methyl Jasmo... 42 0.050
gb|AC144645.17| Medicago truncatula clone mth2-11e15, compl... 42 0.050
gb|AW693785.1|AW693785 NF069A08ST1F1056 Developing stem Med... 40 0.20
gb|BF644184.1|BF644184 NF060D07EC1F1062 Elicited cell cultu... 40 0.20
gb|BE320617.2|BE320617 NF035B11RT1F1089 Developing root Med... 40 0.20
gb|BQ125007.1|BQ125007 EST610583 GLSD Medicago truncatula c... 40 0.20
gb|AJ501402.1|AJ501402 AJ501402 MTAMP Medicago truncatula c... 40 0.20
gb|CX531429.1|CX531429 s13dNF34A05MJ034_256808 Methyl Jasmo... 40 0.20
gb|AC144617.10| Medicago truncatula clone mth2-7m9, complet... 40 0.20
gb|AC150743.10| Medicago truncatula clone mth2-145c18, WORK... 40 0.20
gb|AC150743.11| Medicago truncatula clone mth2-145c18, WORK... 40 0.20
>gb|BF644787.1|BF644787 NF016A03EC1F1020 Elicited cell culture Medicago truncatula cDNA
clone NF016A03EC 5', mRNA sequence
Length = 682
Score = 44.1 bits (22), Expect = 0.013
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 30 ccagcagcagcaacagcaacaa 51
||||||||||||||||||||||
Sbjct: 605 ccagcagcagcaacagcaacaa 626
>gb|CG930301.1|CG930301 MBECU73TF mth2 Medicago truncatula genomic clone 29M1, DNA sequence
Length = 848
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 634 cagcagcagcaacagcaacaa 654
>gb|BG453640.1|BG453640 NF100A03LF1F1018 Developing leaf Medicago truncatula cDNA clone
NF100A03LF 5', mRNA sequence
Length = 661
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 385 cagcagcagcaacagcaacaa 405
>gb|BG647317.1|BG647317 EST508936 HOGA Medicago truncatula cDNA clone pHOGA-16F9 5' end,
mRNA sequence
Length = 514
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 125 cagcagcagcaacagcaacaa 145
>gb|BM779678.1|BM779678 EST590254 KV2 Medicago truncatula cDNA clone pKV2-52B20, mRNA
sequence
Length = 762
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 716 cagcagcagcaacagcaacaa 736
>gb|BM780055.1|BM780055 EST590631 KV2 Medicago truncatula cDNA clone pKV2-53H16, mRNA
sequence
Length = 849
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 718 cagcagcagcaacagcaacaa 738
>gb|CX532396.1|CX532396 s13dNF61C07MJ050_271085 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 621
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 427 cagcagcagcaacagcaacaa 447
>gb|AC144645.17| Medicago truncatula clone mth2-11e15, complete sequence
Length = 124394
Score = 42.1 bits (21), Expect = 0.050
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 31 cagcagcagcaacagcaacaa 51
|||||||||||||||||||||
Sbjct: 65285 cagcagcagcaacagcaacaa 65265
>gb|AW693785.1|AW693785 NF069A08ST1F1056 Developing stem Medicago truncatula cDNA clone
NF069A08ST 5', mRNA sequence
Length = 642
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 39 cagcagcagcaacagcaaca 58
>gb|BF644184.1|BF644184 NF060D07EC1F1062 Elicited cell culture Medicago truncatula cDNA
clone NF060D07EC 5', mRNA sequence
Length = 402
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 42 cagcagcagcaacagcaaca 61
>gb|BE320617.2|BE320617 NF035B11RT1F1089 Developing root Medicago truncatula cDNA clone
NF035B11RT 5', mRNA sequence
Length = 431
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 35 cagcagcagcaacagcaaca 54
>gb|BQ125007.1|BQ125007 EST610583 GLSD Medicago truncatula cDNA clone pGLSD-37J12, mRNA
sequence
Length = 676
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 36 cagcagcagcaacagcaaca 55
>gb|AJ501402.1|AJ501402 AJ501402 MTAMP Medicago truncatula cDNA clone mtgmadc120006e05,
mRNA sequence
Length = 728
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 71 cagcagcagcaacagcaaca 90
>gb|CX531429.1|CX531429 s13dNF34A05MJ034_256808 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 567
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 103 cagcagcagcaacagcaaca 122
>gb|AC144617.10| Medicago truncatula clone mth2-7m9, complete sequence
Length = 122853
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 108958 cagcagcagcaacagcaaca 108977
>gb|AC150743.10| Medicago truncatula clone mth2-145c18, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 134183
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 58260 cagcagcagcaacagcaaca 58279
>gb|AC150743.11| Medicago truncatula clone mth2-145c18, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 134188
Score = 40.1 bits (20), Expect = 0.20
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 31 cagcagcagcaacagcaaca 50
||||||||||||||||||||
Sbjct: 58265 cagcagcagcaacagcaaca 58284
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 66,119
Number of Sequences: 392609
Number of extensions: 66119
Number of successful extensions: 6524
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6472
Number of HSP's gapped (non-prelim): 52
length of query: 571
length of database: 441,732,993
effective HSP length: 19
effective length of query: 552
effective length of database: 434,273,422
effective search space: 239718928944
effective search space used: 239718928944
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)