BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3696537.2.1
         (592 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC149637.11|  Medicago truncatula clone mth2-181h2, compl...    42   0.052
gb|BF519003.1|BF519003  EST456400 DSIL Medicago truncatula c...    40   0.21 
gb|BF632888.1|BF632888  NF047F05DT1F1047 Drought Medicago tr...    40   0.21 
gb|BE320768.2|BE320768  NF028D09RT1F1074 Developing root Med...    40   0.21 
gb|AJ504392.1|AJ504392  AJ504392 MTAMP Medicago truncatula c...    40   0.21 
gb|CA918926.1|CA918926  EST636644 MTUS Medicago truncatula c...    40   0.21 
gb|CF068132.1|CF068132  EST668853 MTUS Medicago truncatula c...    40   0.21 
gb|DW015437.1|DW015437  EST1224398 MTY Medicago truncatula c...    40   0.21 
gb|DW015870.1|DW015870  EST1224831 MTY Medicago truncatula c...    40   0.21 
gb|DW016114.1|DW016114  EST1225075 MTY Medicago truncatula c...    40   0.21 

>gb|AC149637.11| Medicago truncatula clone mth2-181h2, complete sequence
          Length = 116616

 Score = 42.1 bits (21), Expect = 0.052
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 264   gggtgttgtaagagctgcatccagg 288
             |||||||||||||| ||||||||||
Sbjct: 72576 gggtgttgtaagaggtgcatccagg 72600



>gb|BF519003.1|BF519003 EST456400 DSIL Medicago truncatula cDNA clone pDSIL-19A20, mRNA
           sequence
          Length = 598

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 416 gggtgttgtaagaggtgcatccag 439



>gb|BF632888.1|BF632888 NF047F05DT1F1047 Drought Medicago truncatula cDNA clone NF047F05DT
           5', mRNA sequence
          Length = 485

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 439 gggtgttgtaagaggtgcatccag 462



>gb|BE320768.2|BE320768 NF028D09RT1F1074 Developing root Medicago truncatula cDNA clone
           NF028D09RT 5', mRNA sequence
          Length = 211

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 66  gggtgttgtaagaggtgcatccag 89



>gb|AJ504392.1|AJ504392 AJ504392 MTAMP Medicago truncatula cDNA clone mtgmadc120046h11,
           mRNA sequence
          Length = 629

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 481 gggtgttgtaagaggtgcatccag 504



>gb|CA918926.1|CA918926 EST636644 MTUS Medicago truncatula cDNA clone MTUS-4C6, mRNA
           sequence
          Length = 654

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 453 gggtgttgtaagaggtgcatccag 430



>gb|CF068132.1|CF068132 EST668853 MTUS Medicago truncatula cDNA clone MTUS-4C6, mRNA
           sequence
          Length = 710

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 369 gggtgttgtaagaggtgcatccag 392



>gb|DW015437.1|DW015437 EST1224398 MTY Medicago truncatula cDNA clone MTYA515, mRNA
           sequence
          Length = 888

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 483 gggtgttgtaagaggtgcatccag 506



>gb|DW015870.1|DW015870 EST1224831 MTY Medicago truncatula cDNA clone MTYAA64, mRNA
           sequence
          Length = 852

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 472 gggtgttgtaagaggtgcatccag 495



>gb|DW016114.1|DW016114 EST1225075 MTY Medicago truncatula cDNA clone MTYAD33, mRNA
           sequence
          Length = 869

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 264 gggtgttgtaagagctgcatccag 287
           |||||||||||||| |||||||||
Sbjct: 488 gggtgttgtaagaggtgcatccag 511



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 99,386
Number of Sequences: 392609
Number of extensions: 99386
Number of successful extensions: 6200
Number of sequences better than  0.5: 10
Number of HSP's better than  0.5 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6188
Number of HSP's gapped (non-prelim): 12
length of query: 592
length of database: 441,732,993
effective HSP length: 19
effective length of query: 573
effective length of database: 434,273,422
effective search space: 248838670806
effective search space used: 248838670806
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)