BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3665490.2.1
         (1289 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC159535.5|  Medicago truncatula clone mth2-152f22, WORKI...    50   5e-004
gb|BF004335.1|BF004335  EST432833 KV1 Medicago truncatula cD...    44   0.029
gb|BI263619.1|BI263619  NF090D12PL1F1102 Phosphate starved l...    40   0.45 
gb|DW017219.1|DW017219  EST1226180 MTY Medicago truncatula c...    40   0.45 

>gb|AC159535.5| Medicago truncatula clone mth2-152f22, WORKING DRAFT SEQUENCE, 7
             unordered pieces
          Length = 129622

 Score = 50.1 bits (25), Expect = 5e-004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 989   cctgcacgaagcagtcgtggaagtg 1013
             |||||||||||||||||||||||||
Sbjct: 45476 cctgcacgaagcagtcgtggaagtg 45452



>gb|BF004335.1|BF004335 EST432833 KV1 Medicago truncatula cDNA clone pKV1-17I4, mRNA sequence
          Length = 485

 Score = 44.1 bits (22), Expect = 0.029
 Identities = 28/30 (93%)
 Strand = Plus / Minus

                                          
Query: 984  gcagccctgcacgaagcagtcgtggaagtg 1013
            |||||| ||||||||||||| |||||||||
Sbjct: 227  gcagccgtgcacgaagcagtggtggaagtg 198



>gb|BI263619.1|BI263619 NF090D12PL1F1102 Phosphate starved leaf Medicago truncatula cDNA
            clone NF090D12PL 5', mRNA sequence
          Length = 652

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 997  aagcagtcgtggaagtggag 1016
            ||||||||||||||||||||
Sbjct: 247  aagcagtcgtggaagtggag 228



>gb|DW017219.1|DW017219 EST1226180 MTY Medicago truncatula cDNA clone MTYAQ91, mRNA sequence
          Length = 821

 Score = 40.1 bits (20), Expect = 0.45
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 997  aagcagtcgtggaagtggag 1016
            ||||||||||||||||||||
Sbjct: 178  aagcagtcgtggaagtggag 159



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 105,386
Number of Sequences: 392609
Number of extensions: 105386
Number of successful extensions: 6449
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6445
Number of HSP's gapped (non-prelim): 4
length of query: 1289
length of database: 441,732,993
effective HSP length: 20
effective length of query: 1269
effective length of database: 433,880,813
effective search space: 550594751697
effective search space used: 550594751697
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)