BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3570920.2.1
(786 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula c... 44 0.018
gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 root... 44 0.018
gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula c... 42 0.069
gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula c... 40 0.27
gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula c... 40 0.27
gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula c... 40 0.27
gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 ... 40 0.27
>gb|AJ500301.1|AJ500301 AJ500301 MTGIM Medicago truncatula cDNA clone mtgmacc120014h08,
mRNA sequence
Length = 164
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 47 tggtacctgcccgggcggccgc 26
>gb|AJ621860.1|AJ621860 AJ621860 Medicago truncatula J5 roots Medicago truncatula cDNA
clone MtGmEs470, mRNA sequence
Length = 1151
Score = 44.1 bits (22), Expect = 0.018
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 765 tggtacctgcccgggcggccgc 786
||||||||||||||||||||||
Sbjct: 299 tggtacctgcccgggcggccgc 278
>gb|AJ500566.1|AJ500566 AJ500566 MTGIM Medicago truncatula cDNA clone mtgmacc120017g10,
mRNA sequence
Length = 406
Score = 42.1 bits (21), Expect = 0.069
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 766 ggtacctgcccgggcggccgc 786
|||||||||||||||||||||
Sbjct: 289 ggtacctgcccgggcggccgc 309
>gb|AJ500181.1|AJ500181 AJ500181 MTGIM Medicago truncatula cDNA clone mtgmacc120013f03,
mRNA sequence
Length = 614
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 204 gtacctgcccgggcggccgc 223
>gb|AJ500217.1|AJ500217 AJ500217 MTGIM Medicago truncatula cDNA clone mtgmacc120014a04,
mRNA sequence
Length = 458
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 300 gtacctgcccgggcggccgc 319
>gb|AJ500711.1|AJ500711 AJ500711 MTGIM Medicago truncatula cDNA clone mtgmacc120019d05,
mRNA sequence
Length = 591
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 339 gtacctgcccgggcggccgc 320
>gb|AJ864417.1|AJ864417 AJ864417 Medicago truncatula cv. J5 root Medicago truncatula cDNA
clone MtPfEs361, mRNA sequence
Length = 593
Score = 40.1 bits (20), Expect = 0.27
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 767 gtacctgcccgggcggccgc 786
||||||||||||||||||||
Sbjct: 24 gtacctgcccgggcggccgc 5
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 142,083
Number of Sequences: 392609
Number of extensions: 142083
Number of successful extensions: 9926
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9917
Number of HSP's gapped (non-prelim): 9
length of query: 786
length of database: 441,732,993
effective HSP length: 20
effective length of query: 766
effective length of database: 433,880,813
effective search space: 332352702758
effective search space used: 332352702758
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)