BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3562100.2.1
(759 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved l... 86 5e-015
gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmo... 86 5e-015
gb|AC155101.19| Medicago truncatula clone mth2-139j13, comp... 86 5e-015
gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago tr... 70 3e-010
gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula ... 70 3e-010
gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago... 64 2e-008
gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula c... 64 2e-008
gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infect... 64 2e-008
gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula c... 52 7e-005
gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula c... 52 7e-005
gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula c... 52 7e-005
gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula c... 52 7e-005
gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula c... 52 7e-005
gb|AC137820.11| Medicago truncatula clone mth2-15f9, comple... 52 7e-005
>gb|BE324374.2|BE324374 NF015G01PL1F1005 Phosphate starved leaf Medicago truncatula cDNA
clone NF015G01PL 5', mRNA sequence
Length = 346
Score = 85.7 bits (43), Expect = 5e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 159 ttcaaagaagtagctatcattcgacatccacgtgttggtgaatatgcatttggattcat 217
>gb|CX528962.1|CX528962 s13dNF10H09MJ076_243984 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 611
Score = 85.7 bits (43), Expect = 5e-015
Identities = 55/59 (93%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 545 ttcaaagaagtagctatcattcgacatccacgtgttggtgaatatgcatttggattcat 603
>gb|AC155101.19| Medicago truncatula clone mth2-139j13, complete sequence
Length = 124152
Score = 85.7 bits (43), Expect = 5e-015
Identities = 55/59 (93%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| |||||||||||||||||||||||||||||
Sbjct: 107069 ttcaaagaagtagctatcattcgacatccacgtgttggtgaatatgcatttggattcat 107011
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Minus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||||||
Sbjct: 113449 ttcaaagaagtagccatcattcgacatccacgtgtaggtgaatatgcattgggattcat 113391
>gb|BF631862.1|BF631862 NF025F04DT1F1032 Drought Medicago truncatula cDNA clone NF025F04DT
5', mRNA sequence
Length = 643
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||||||
Sbjct: 553 ttcaaagaagtagccatcattcgacatccacgtgtaggtgaatatgcattgggattcat 611
>gb|BI311684.1|BI311684 EST5313434 GESD Medicago truncatula cDNA clone pGESD13J1 5' end,
mRNA sequence
Length = 687
Score = 69.9 bits (35), Expect = 3e-010
Identities = 53/59 (89%)
Strand = Plus / Plus
Query: 51 ttcaaagaagtagcaatcattagtcatccccgtgttggtgaatatgcatttggattcat 109
|||||||||||||| |||||| | ||||| ||||| |||||||||||||| ||||||||
Sbjct: 193 ttcaaagaagtagccatcattcgacatccacgtgtaggtgaatatgcattgggattcat 251
>gb|BQ154720.1|BQ154720 NF099G01IR1F1008 Irradiated Medicago truncatula cDNA clone
NF099G01IR 5', mRNA sequence
Length = 666
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Plus
Query: 243 attcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgat 298
||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 466 attcgagaaggaatagaaatcattgtttctggaggaatgacaatgccacaggtgat 521
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 296 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 341
>gb|CA922013.1|CA922013 EST639731 MTUS Medicago truncatula cDNA clone MTUS-47E10, mRNA
sequence
Length = 779
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 243 attcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgat 298
||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 301 attcgagaaggaatagaaatcattgtttctggaggaatgacaatgccacaggtgat 246
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 471 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 426
>gb|CX523674.1|CX523674 s13dNF02F03AT029_322732 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 692
Score = 63.9 bits (32), Expect = 2e-008
Identities = 50/56 (89%)
Strand = Plus / Minus
Query: 243 attcgtgaaggcatagaaataattgtttcaggaggaatgactatgccgcaggtgat 298
||||| ||||| |||||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 325 attcgagaaggaatagaaatcattgtttctggaggaatgacaatgccacaggtgat 270
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 495 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 450
>gb|BF519079.1|BF519079 EST456539 DSIL Medicago truncatula cDNA clone pDSIL-19L9, mRNA
sequence
Length = 651
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 476 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 521
>gb|BI308637.1|BI308637 EST530047 GPOD Medicago truncatula cDNA clone pGPOD-7O2 5' end,
mRNA sequence
Length = 760
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 671 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 716
>gb|BQ165647.1|BQ165647 EST611516 KVKC Medicago truncatula cDNA clone pKVKC-10G1, mRNA
sequence
Length = 798
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 715 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 760
>gb|CA990471.1|CA990471 EST643979 GESD Medicago truncatula cDNA clone GESD-28D22, mRNA
sequence
Length = 821
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 552 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 597
>gb|CA990480.1|CA990480 EST643988 GESD Medicago truncatula cDNA clone GESD-28F22, mRNA
sequence
Length = 712
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Plus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 525 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 570
>gb|AC137820.11| Medicago truncatula clone mth2-15f9, complete sequence
Length = 134674
Score = 52.0 bits (26), Expect = 7e-005
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 73 gtcatccccgtgttggtgaatatgcatttggattcataacatcaac 118
||||||| || |||||||||||||| ||||| ||||| ||||||||
Sbjct: 118868 gtcatccgcgcgttggtgaatatgcttttggcttcattacatcaac 118823
Score = 52.0 bits (26), Expect = 7e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 257 agaaataattgtttcaggaggaatgactatgccgcaggtgat 298
|||||| |||||||| ||||||||||| ||||| ||||||||
Sbjct: 117289 agaaatcattgtttctggaggaatgacaatgccacaggtgat 117248
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 188,125
Number of Sequences: 392609
Number of extensions: 188125
Number of successful extensions: 13175
Number of sequences better than 0.5: 14
Number of HSP's better than 0.5 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 13143
Number of HSP's gapped (non-prelim): 32
length of query: 759
length of database: 441,732,993
effective HSP length: 20
effective length of query: 739
effective length of database: 433,880,813
effective search space: 320637920807
effective search space used: 320637920807
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)