BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3536697.2.1
(651 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower M... 151 9e-035
gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cD... 149 3e-034
gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula... 149 3e-034
gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell cultu... 137 1e-030
gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower M... 135 5e-030
gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula c... 123 2e-026
gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula c... 117 1e-024
gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula... 115 5e-024
gb|AC152937.21| Medicago truncatula clone mth2-96n6, comple... 88 1e-015
gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORK... 64 2e-008
gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING... 64 2e-008
gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING... 64 2e-008
gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medi... 58 1e-006
gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula... 46 0.004
gb|CG975146.1|CG975146 MBEMC66TF mth2 Medicago truncatula g... 44 0.015
gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula... 42 0.057
gb|BF519221.1|BF519221 EST456683 DSIL Medicago truncatula c... 42 0.057
>gb|BI272952.1|BI272952 NF099F04FL1F1042 Developing flower Medicago truncatula cDNA clone
NF099F04FL 5', mRNA sequence
Length = 455
Score = 151 bits (76), Expect = 9e-035
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 61 gttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactaga 120
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 121 agnttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacat 180
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| |||||||||||||| || || ||||| ||||| | ||||||||| || || ||||||
Sbjct: 181 gtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtg 240
Query: 186 gtccaggacaccatcgacccaga 208
||||| || || |||||||||||
Sbjct: 241 gtccaagaaacaatcgacccaga 263
>gb|BE202645.1|BE202645 EST402667 KV1 Medicago truncatula cDNA clone pKV1-2M8, mRNA
sequence
Length = 506
Score = 149 bits (75), Expect = 3e-034
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 9 gttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactaga 68
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 69 agtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacat 128
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| |||||||||||||| || || ||||| ||||| | ||||||||| || || ||||||
Sbjct: 129 gtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtg 188
Query: 186 gtccaggacaccatcgacccaga 208
||||| || || |||||||||||
Sbjct: 189 gtccaagaaacaatcgacccaga 211
>gb|AL388415.1|AL388415 MtBC48D08F1 MtBC Medicago truncatula cDNA clone MtBC48D08 T3, mRNA
sequence
Length = 489
Score = 149 bits (75), Expect = 3e-034
Identities = 171/203 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 213 gttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactaga 272
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 273 agtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacat 332
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| |||||||||||||| || || ||||| ||||| | ||||||||| || || ||||||
Sbjct: 333 gtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtg 392
Query: 186 gtccaggacaccatcgacccaga 208
||||| || || |||||||||||
Sbjct: 393 gtccaagaaacaatcgacccaga 415
>gb|BF646432.1|BF646432 NF072B12EC1F1096 Elicited cell culture Medicago truncatula cDNA
clone NF072B12EC 5', mRNA sequence
Length = 637
Score = 137 bits (69), Expect = 1e-030
Identities = 156/185 (84%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 453 gttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactaga 512
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 513 agtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacat 572
Query: 126 attgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtg 185
| |||||||||||||| || || ||||| ||||| | ||||||||| || || ||||||
Sbjct: 573 gtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtg 632
Query: 186 gtcca 190
|||||
Sbjct: 633 gtcca 637
>gb|BQ147474.1|BQ147474 NF040H09FL1F1079 Developing flower Medicago truncatula cDNA clone
NF040H09FL 5', mRNA sequence
Length = 682
Score = 135 bits (68), Expect = 5e-030
Identities = 171/204 (83%), Gaps = 1/204 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgc-tgaggaaggagcctttgacagtctatggtgatggcaagcagactag 64
||||||||||||| |||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 42 gttgctcaggcgcctgaggaaggagcctttgacagtttatggggatgggaagcagactag 101
Query: 65 gagctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagca 124
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 102 aagtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaaca 161
Query: 125 cattgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
| |||||||||||||| || || ||||| ||||| | ||||||||| || || |||||
Sbjct: 162 tgtggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggt 221
Query: 185 ggtccaggacaccatcgacccaga 208
|||||| || || |||||||||||
Sbjct: 222 ggtccaagaaacaatcgacccaga 245
>gb|BG647622.1|BG647622 EST509241 HOGA Medicago truncatula cDNA clone pHOGA-17M16 5' end,
mRNA sequence
Length = 710
Score = 123 bits (62), Expect = 2e-026
Identities = 156/186 (83%), Gaps = 1/186 (0%)
Strand = Plus / Plus
Query: 6 gttgctcaggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactagg 65
||||||||||||||||||||||||||||||||||| ||||| ||||| |||||||||||
Sbjct: 521 gttgctcaggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactaga 580
Query: 66 agctttcaatatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcac 125
|| || ||||| ||||| || |||||||| || || ||| || ||||||||||| ||
Sbjct: 581 agtttccaatacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacat 640
Query: 126 at-tgggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggt 184
| |||||||||||||| || || ||||| ||||| | ||||||||| || || |||||
Sbjct: 641 gtgggggccgttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggt 700
Query: 185 ggtcca 190
||||||
Sbjct: 701 ggtcca 706
>gb|CA920250.1|CA920250 EST637968 MTUS Medicago truncatula cDNA clone MTUS-25E8, mRNA
sequence
Length = 737
Score = 117 bits (59), Expect = 1e-024
Identities = 162/195 (83%), Gaps = 1/195 (0%)
Strand = Plus / Minus
Query: 14 ggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagctttca 73
||||||||||||||||| ||||||||| ||||| ||||| ||||||||||| || || ||
Sbjct: 688 ggcgctgaggaaggagcttttgacagtttatgg-gatgggaagcagactagaagtttcca 630
Query: 74 atatgtctcagatttggtggaagggctgatgaagctcatggaaggggagcacattgggcc 133
||| ||||| || |||||||| || || ||| || ||||||||||| || | |||||
Sbjct: 629 atacgtctctgacttggtggagggtctaatgcgccttatggaaggggaacatgtggggcc 570
Query: 134 gttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtccagga 193
||||||||| || || ||||| ||||| | ||||||||| || || ||||||||||| ||
Sbjct: 569 gttcaaccttggaaatcctggtgaatttaccatgctggaacttgccaaggtggtccaaga 510
Query: 194 caccatcgacccaga 208
|| |||||||||||
Sbjct: 509 aacaatcgacccaga 495
>gb|AL378617.1|AL378617 MtBB39D06F1 MtBB Medicago truncatula cDNA clone MtBB39D06 T3, mRNA
sequence
Length = 477
Score = 115 bits (58), Expect = 5e-024
Identities = 154/186 (82%)
Strand = Plus / Plus
Query: 23 gaaggagcctttgacagtctatggtgatggcaagcagactaggagctttcaatatgtctc 82
|||||||||||||||||| ||||| ||||| ||||||||||| || || ||||| |||||
Sbjct: 1 gaaggagcctttgacagtttatggggatgggaagcagactagaagtttccaatacgtctc 60
Query: 83 agatttggtggaagggctgatgaagctcatggaaggggagcacattgggccgttcaacct 142
|| |||||||| || || ||| || ||||||||||| || | ||||||||||||||
Sbjct: 61 tgacttggtggagggtctaatgcgccttatggaaggggaacatgtggggccgttcaacct 120
Query: 143 cggcaaccctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcga 202
|| || ||||| ||||| | ||||||||| || || ||||||||||| || || |||||
Sbjct: 121 tggaaatcctggtgaatttaccatgctggaacttgccaaggtggtccaagaaacaatcga 180
Query: 203 cccaga 208
||||||
Sbjct: 181 cccaga 186
>gb|AC152937.21| Medicago truncatula clone mth2-96n6, complete sequence
Length = 108802
Score = 87.7 bits (44), Expect = 1e-015
Identities = 71/80 (88%)
Strand = Plus / Minus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||||||||||||||||||||||||||| ||||| ||||| ||||||||||| || ||
Sbjct: 42369 caggcgctgaggaaggagcctttgacagtttatggggatgggaagcagactagaagtttc 42310
Query: 72 caatatgtctcagatttggt 91
||||| ||||| || |||||
Sbjct: 42309 caatacgtctctgacttggt 42290
Score = 44.1 bits (22), Expect = 0.015
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
||||||||||| || | |||||||||||||| || || ||||| ||||| | |||||||
Sbjct: 41006 atggaaggggaacatgtggggccgttcaaccttggaaatcctggtgaatttaccatgctg 40947
Query: 171 ga 172
||
Sbjct: 40946 ga 40945
>gb|AC147012.23| Medicago truncatula clone mth2-151j16, WORKING DRAFT SEQUENCE, 2
ordered pieces
Length = 119544
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Minus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| ||||||||||| || ||||| || ||||| ||||| || ||||| || ||||||
Sbjct: 66710 caggcactgaggaaggatccattgactgtttatggcgatgggaaacagacaagaagcttt 66651
Query: 72 caatatgtctcagatttggt 91
|||| ||| |||||||||||
Sbjct: 66650 caatttgtttcagatttggt 66631
>gb|AC174367.2| Medicago truncatula clone mth2-47m8, WORKING DRAFT SEQUENCE
Length = 76602
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| ||||||||||| || ||||| || ||||| ||||| || ||||| || ||||||
Sbjct: 9877 caggcactgaggaaggatccattgactgtttatggcgatgggaaacagacaagaagcttt 9936
Query: 72 caatatgtctcagatttggt 91
|||| ||| |||||||||||
Sbjct: 9937 caatttgtttcagatttggt 9956
>gb|AC181973.1| Medicago truncatula clone mth2-12f6, WORKING DRAFT SEQUENCE
Length = 115891
Score = 63.9 bits (32), Expect = 2e-008
Identities = 68/80 (85%)
Strand = Plus / Plus
Query: 12 caggcgctgaggaaggagcctttgacagtctatggtgatggcaagcagactaggagcttt 71
||||| ||||||||||| || ||||| || ||||| ||||| || ||||| || ||||||
Sbjct: 49182 caggcactgaggaaggatccattgactgtttatggcgatgggaaacagacaagaagcttt 49241
Query: 72 caatatgtctcagatttggt 91
|||| ||| |||||||||||
Sbjct: 49242 caatttgtttcagatttggt 49261
>gb|BQ139639.1|BQ139639 NF022D07PH1F1061 Phoma-infected Medicago truncatula cDNA clone
NF022D07PH 5', mRNA sequence
Length = 711
Score = 58.0 bits (29), Expect = 1e-006
Identities = 67/80 (83%)
Strand = Plus / Minus
Query: 129 gggccgttcaacctcggcaaccctggagaattcagcatgctggagctggctaaggtggtc 188
|||||||||||||| || || | ||| ||||| | ||||||||| || || |||||||||
Sbjct: 636 gggccgttcaaccttggaaatcntggtgaatttaccatgctggaacttgccaaggtggtc 577
Query: 189 caggacaccatcgacccaga 208
|| || || |||||||||||
Sbjct: 576 caagaaacaatcgacccaga 557
>gb|AL388416.1|AL388416 MtBC48D08R1 MtBC Medicago truncatula cDNA clone MtBC48D08 T7, mRNA
sequence
Length = 535
Score = 46.1 bits (23), Expect = 0.004
Identities = 50/59 (84%)
Strand = Plus / Plus
Query: 150 cctggagaattcagcatgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||||| ||||| | ||||||||| || || ||||||||||| || || |||||||||||
Sbjct: 6 cctggtgaatttaccatgctggaacttgccaaggtggtccaagaaacaatcgacccaga 64
>gb|CG975146.1|CG975146 MBEMC66TF mth2 Medicago truncatula genomic clone 84L11, DNA
sequence
Length = 915
Score = 44.1 bits (22), Expect = 0.015
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 111 atggaaggggagcacattgggccgttcaacctcggcaaccctggagaattcagcatgctg 170
||||||||||| || | |||||||||||||| || || ||||| ||||| | |||||||
Sbjct: 322 atggaaggggaacatgtggggccgttcaaccttggaaatcctggtgaatttaccatgctg 381
Query: 171 ga 172
||
Sbjct: 382 ga 383
>gb|AL375748.1|AL375748 MtBB16G07R2 MtBB Medicago truncatula cDNA clone MtBB16G07 T7, mRNA
sequence
Length = 529
Score = 42.1 bits (21), Expect = 0.057
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 164 catgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||||||||| || || ||||||||||| || || |||||||||||
Sbjct: 11 catgctggaacttgccaaggtggtccaagatacaatcgacccaga 55
>gb|BF519221.1|BF519221 EST456683 DSIL Medicago truncatula cDNA clone pDSIL-20E13, mRNA
sequence
Length = 405
Score = 42.1 bits (21), Expect = 0.057
Identities = 39/45 (86%)
Strand = Plus / Plus
Query: 164 catgctggagctggctaaggtggtccaggacaccatcgacccaga 208
||||||||| || || ||||||||||| || || |||||||||||
Sbjct: 3 catgctggaacttgccaaggtggtccaagaaacaatcgacccaga 47
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 100,697
Number of Sequences: 392609
Number of extensions: 100697
Number of successful extensions: 8184
Number of sequences better than 0.5: 17
Number of HSP's better than 0.5 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 8146
Number of HSP's gapped (non-prelim): 28
length of query: 651
length of database: 441,732,993
effective HSP length: 19
effective length of query: 632
effective length of database: 434,273,422
effective search space: 274460802704
effective search space used: 274460802704
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)