BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3438088.2.1
         (615 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CR509377.1|  mth4-20D1FM1 BAC end, cultivar Jemalong A17...    44   0.014
gb|CG925677.1|CG925677  MBEDJ30TRC mth2 Medicago truncatula ...    40   0.21 
emb|CR955009.1|  Medicago truncatula chromosome 5 clone mth2...    40   0.21 

>emb|CR509377.1| mth4-20D1FM1 BAC end, cultivar Jemalong A17 of Medicago truncatula,
           genomic survey sequence
          Length = 469

 Score = 44.1 bits (22), Expect = 0.014
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 160 aatctaaatctaaataaataaa 181
           ||||||||||||||||||||||
Sbjct: 98  aatctaaatctaaataaataaa 77



>gb|CG925677.1|CG925677 MBEDJ30TRC mth2 Medicago truncatula genomic clone 32E12, DNA
           sequence
          Length = 364

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 251 cggcggcggcggaggcgaagggaa 274
           ||||||||||||||||| ||||||
Sbjct: 289 cggcggcggcggaggcggagggaa 312



>emb|CR955009.1| Medicago truncatula chromosome 5 clone mth2-38i20, COMPLETE SEQUENCE
          Length = 123473

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 204   accataccataccatacccc 223
             ||||||||||||||||||||
Sbjct: 33710 accataccataccatacccc 33729



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 162,118
Number of Sequences: 392609
Number of extensions: 162118
Number of successful extensions: 12399
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12390
Number of HSP's gapped (non-prelim): 8
length of query: 615
length of database: 441,732,993
effective HSP length: 19
effective length of query: 596
effective length of database: 434,273,422
effective search space: 258826959512
effective search space used: 258826959512
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)