BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3345642.2.1
         (600 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AW981266.1|AW981266  EST392419 DSIL Medicago truncatula c...    44   0.013
gb|BE205173.1|BE205173  EST397849 KV0 Medicago truncatula cD...    44   0.013
gb|AL369437.1|AL369437  MtBA31B01R1 MtBA Medicago truncatula...    44   0.013
gb|CA918792.1|CA918792  EST636510 MTUS Medicago truncatula c...    44   0.013
gb|CF068061.1|CF068061  EST668782 MTUS Medicago truncatula c...    44   0.013
gb|AC146721.7|  Medicago truncatula clone mth2-145n10, compl...    44   0.013

>gb|AW981266.1|AW981266 EST392419 DSIL Medicago truncatula cDNA clone pDSIL-12F23, mRNA
           sequence
          Length = 667

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
           |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 170 tgctgctgttattcattacaatggaaacatgaaaccttggct 211



>gb|BE205173.1|BE205173 EST397849 KV0 Medicago truncatula cDNA clone pKV0-20H11, mRNA
           sequence
          Length = 585

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
           |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 496 tgctgctgttattcattacaatggaaacatgaaaccttggct 455



>gb|AL369437.1|AL369437 MtBA31B01R1 MtBA Medicago truncatula cDNA clone MtBA31B01 T7, mRNA
           sequence
          Length = 510

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
           |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 8   tgctgctgttattcattacaatggaaacatgaaaccttggct 49



>gb|CA918792.1|CA918792 EST636510 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
           sequence
          Length = 667

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                     
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
           |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 483 tgctgctgttattcattacaatggaaacatgaaaccttggct 442



>gb|CF068061.1|CF068061 EST668782 MTUS Medicago truncatula cDNA clone MTUS-3C6, mRNA
           sequence
          Length = 605

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Plus

                                                     
Query: 348 tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
           |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 109 tgctgctgttattcattacaatggaaacatgaaaccttggct 150



>gb|AC146721.7| Medicago truncatula clone mth2-145n10, complete sequence
          Length = 133097

 Score = 44.1 bits (22), Expect = 0.013
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                       
Query: 348   tgctgctgttgtgcactataatggaaacatgaaaccctggct 389
             |||||||||| | || || ||||||||||||||||| |||||
Sbjct: 46463 tgctgctgttattcattacaatggaaacatgaaaccttggct 46422



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 156,303
Number of Sequences: 392609
Number of extensions: 156303
Number of successful extensions: 12067
Number of sequences better than  0.5: 6
Number of HSP's better than  0.5 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 12058
Number of HSP's gapped (non-prelim): 9
length of query: 600
length of database: 441,732,993
effective HSP length: 19
effective length of query: 581
effective length of database: 434,273,422
effective search space: 252312858182
effective search space used: 252312858182
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)