BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3336950.2.1
(645 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|AW695082.1|AW695082 NF091D12ST1F1101 Developing stem Med... 70 3e-010
gb|BF646871.1|BF646871 NF068B09EC1F1076 Elicited cell cultu... 70 3e-010
gb|BF647863.1|BF647863 NF038B02EC1F1016 Elicited cell cultu... 70 3e-010
gb|AW693828.2|AW693828 NF069E04ST1F1034 Developing stem Med... 70 3e-010
gb|BG450081.1|BG450081 NF011E06DT1F1051 Drought Medicago tr... 70 3e-010
gb|BI308280.1|BI308280 EST529690 GPOD Medicago truncatula c... 70 3e-010
gb|BQ148260.1|BQ148260 NF065D12FL1F1102 Developing flower M... 70 3e-010
gb|AJ498016.1|AJ498016 AJ498016 MTPOSE Medicago truncatula ... 70 3e-010
gb|CB891685.1|CB891685 EST648654 KV3 Medicago truncatula cD... 70 3e-010
gb|CF068981.1|CF068981 EST669702 MTUS Medicago truncatula c... 70 3e-010
gb|CX523840.1|CX523840 s13dNF05F06AT059_440078 Aphid-Infect... 70 3e-010
gb|CX535243.1|CX535243 s13dNF37C05MJ038_388663 Methyl Jasmo... 70 3e-010
gb|AW689696.1|AW689696 NF023D01ST1F1000 Developing stem Med... 64 2e-008
gb|AW685281.1|AW685281 NF027B07NR1F1000 Nodulated root Medi... 54 1e-005
gb|CX535093.1|CX535093 s13dNF36H09MJ080_388365 Methyl Jasmo... 50 2e-004
gb|AC141107.5| Medicago truncatula clone mth2-34a12, comple... 44 0.014
emb|CR485005.1| mth2-152F18RM1 BAC end, cultivar Jemalong A... 42 0.057
gb|CX542040.1|CX542040 s13dNF89D01GS014_467388 Germinating ... 42 0.057
gb|CB892038.1|CB892038 EST649007 KV3 Medicago truncatula cD... 40 0.22
emb|CR954185.1| Medicago truncatula chromosome 5 clone mth4... 40 0.22
>gb|AW695082.1|AW695082 NF091D12ST1F1101 Developing stem Medicago truncatula cDNA clone
NF091D12ST 5', mRNA sequence
Length = 628
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 455 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 396
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 395 catgattgatctcctcaaa 377
>gb|BF646871.1|BF646871 NF068B09EC1F1076 Elicited cell culture Medicago truncatula cDNA
clone NF068B09EC 5', mRNA sequence
Length = 652
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 399 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 340
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 339 catgattgatctcctcaaa 321
Score = 42.1 bits (21), Expect = 0.057
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 583 ttcatgccccagaanccagggttataaacgccaacaccatcagt 540
>gb|BF647863.1|BF647863 NF038B02EC1F1016 Elicited cell culture Medicago truncatula cDNA
clone NF038B02EC 5', mRNA sequence
Length = 614
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 432 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 373
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 372 catgattgatctcctcaaa 354
>gb|AW693828.2|AW693828 NF069E04ST1F1034 Developing stem Medicago truncatula cDNA clone
NF069E04ST 5', mRNA sequence
Length = 604
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 428 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 369
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 368 catgattgatctcctcaaa 350
>gb|BG450081.1|BG450081 NF011E06DT1F1051 Drought Medicago truncatula cDNA clone NF011E06DT
5', mRNA sequence
Length = 621
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 426 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 367
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 366 catgattgatctcctcaaa 348
>gb|BI308280.1|BI308280 EST529690 GPOD Medicago truncatula cDNA clone pGPOD-2L19 5' end,
mRNA sequence
Length = 808
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 428 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 369
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 368 catgattgatctcctcaaa 350
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 612 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 569
>gb|BQ148260.1|BQ148260 NF065D12FL1F1102 Developing flower Medicago truncatula cDNA clone
NF065D12FL 5', mRNA sequence
Length = 664
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 407 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 348
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 347 catgattgatctcctcaaa 329
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 591 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 548
>gb|AJ498016.1|AJ498016 AJ498016 MTPOSE Medicago truncatula cDNA clone mt--acc955200a10,
mRNA sequence
Length = 565
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 280 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 221
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 220 catgattgatctcctcaaa 202
>gb|CB891685.1|CB891685 EST648654 KV3 Medicago truncatula cDNA clone KV3-51D17, mRNA
sequence
Length = 469
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Plus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 345 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 404
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 405 catgattgatctcctcaaa 423
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Plus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 161 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 204
>gb|CF068981.1|CF068981 EST669702 MTUS Medicago truncatula cDNA clone MTUS-14H2, mRNA
sequence
Length = 530
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 370 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 311
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 310 catgattgatctcctcaaa 292
>gb|CX523840.1|CX523840 s13dNF05F06AT059_440078 Aphid-Infected Shoots Medicago truncatula
cDNA, mRNA sequence
Length = 547
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 459 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 400
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 399 catgattgatctcctcaaa 381
>gb|CX535243.1|CX535243 s13dNF37C05MJ038_388663 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 437
Score = 69.9 bits (35), Expect = 3e-010
Identities = 68/79 (86%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| |||||||| || ||||| |||||||| | || ||||| || |
Sbjct: 273 ggcctccagcttcaaatcctctgttgctcacaagctcagcccacaatcccccagctccag 214
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 213 catgattgatctcctcaaa 195
>gb|AW689696.1|AW689696 NF023D01ST1F1000 Developing stem Medicago truncatula cDNA clone
NF023D01ST 5', mRNA sequence
Length = 634
Score = 63.9 bits (32), Expect = 2e-008
Identities = 67/79 (84%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctg 332
|||||||||||||||| ||| |||| || ||||| |||||||| | || ||||| || |
Sbjct: 406 ggcctccagcttcaaatcctntgttgctcacaagctcagcccacaatcccccagctccag 347
Query: 333 catggttgatctcctcaaa 351
|||| ||||||||||||||
Sbjct: 346 catgattgatctcctcaaa 328
Score = 42.1 bits (21), Expect = 0.057
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 591 ttcatgccccagaanccagggttataaacgccaacaccatcagt 548
>gb|AW685281.1|AW685281 NF027B07NR1F1000 Nodulated root Medicago truncatula cDNA clone
NF027B07NR 5', mRNA sequence
Length = 651
Score = 54.0 bits (27), Expect = 1e-005
Identities = 60/71 (84%)
Strand = Plus / Minus
Query: 279 cagcttcaaaccctctgttactaacaagttcagcccatatgccaccagcccctgcatggt 338
|||||||||||||| ||| | ||||||| ||||||||| || |||| || |||||||
Sbjct: 254 cagcttcaaaccctgagttgttcacaagttgagcccatattcctccagatccagcatggt 195
Query: 339 tgatctcctca 349
|||||||||||
Sbjct: 194 tgatctcctca 184
>gb|CX535093.1|CX535093 s13dNF36H09MJ080_388365 Methyl Jasmonate-Elicited Root Cell
Suspension Culture Medicago truncatula cDNA, mRNA
sequence
Length = 505
Score = 50.1 bits (25), Expect = 2e-004
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgttactaacaagttcagcc 313
|||||||||||||||| |||||||| || ||||| ||||||
Sbjct: 48 ggcctccagcttcaaatcctctgttgctcacaagctcagcc 8
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 232 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 189
>gb|AC141107.5| Medicago truncatula clone mth2-34a12, complete sequence
Length = 142659
Score = 44.1 bits (22), Expect = 0.014
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 302 acaagttcagcccatatgccaccagcccctgcatggttgatctcct 347
||||||| ||||||||| || |||| || ||||||||||||||||
Sbjct: 88729 acaagttgagcccatattcctccagatccagcatggttgatctcct 88684
>emb|CR485005.1| mth2-152F18RM1 BAC end, cultivar Jemalong A17 of Medicago
truncatula, genomic survey sequence
Length = 659
Score = 42.1 bits (21), Expect = 0.057
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 67 attgtagacctttccttcttctatgttca 95
|||||||||||||||||||| ||| ||||
Sbjct: 558 attgtagacctttccttcttgtatattca 530
>gb|CX542040.1|CX542040 s13dNF89D01GS014_467388 Germinating Seed Medicago truncatula cDNA,
mRNA sequence
Length = 522
Score = 42.1 bits (21), Expect = 0.057
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 273 ggcctccagcttcaaaccctctgtt 297
|||||||||||||||| ||||||||
Sbjct: 32 ggcctccagcttcaaatcctctgtt 8
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 216 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 173
>gb|CB892038.1|CB892038 EST649007 KV3 Medicago truncatula cDNA clone KV3-53A7, mRNA
sequence
Length = 569
Score = 40.1 bits (20), Expect = 0.22
Identities = 38/44 (86%)
Strand = Plus / Minus
Query: 92 ttcatgccccaaaaccctgggttgtaaacaccaacaccaccagt 135
||||||||||| || || ||||| ||||| ||||||||| ||||
Sbjct: 203 ttcatgccccagaaaccagggttataaacgccaacaccatcagt 160
>emb|CR954185.1| Medicago truncatula chromosome 5 clone mth4-20m5, WORKING DRAFT
SEQUENCE
Length = 210937
Score = 40.1 bits (20), Expect = 0.22
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 42 ctggtgacttaacaaacata 61
||||||||||||||||||||
Sbjct: 72744 ctggtgacttaacaaacata 72763
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 130,523
Number of Sequences: 392609
Number of extensions: 130523
Number of successful extensions: 9882
Number of sequences better than 0.5: 20
Number of HSP's better than 0.5 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9820
Number of HSP's gapped (non-prelim): 62
length of query: 645
length of database: 441,732,993
effective HSP length: 19
effective length of query: 626
effective length of database: 434,273,422
effective search space: 271855162172
effective search space used: 271855162172
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)