BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3230260.2.1
         (863 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AL381188.1|AL381188  MtBB57D11F1 MtBB Medicago truncatula...    42   0.076
gb|BF650998.1|BF650998  NF099D09EC1F1076 Elicited cell cultu...    42   0.076
gb|BG448613.1|BG448613  NF044A01NR1F1001 Nodulated root Medi...    42   0.076
gb|BI307958.1|BI307958  EST529368 GPOD Medicago truncatula c...    42   0.076
gb|CA990000.1|CA990000  EST643508 GESD Medicago truncatula c...    42   0.076
gb|CA990915.1|CA990915  EST644423 GESD Medicago truncatula c...    42   0.076
gb|AC148484.17|  Medicago truncatula clone mth2-46g10, compl...    42   0.076

>gb|AL381188.1|AL381188 MtBB57D11F1 MtBB Medicago truncatula cDNA clone MtBB57D11 T3, mRNA
           sequence
          Length = 471

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 176 agtagtagcagcagcagcagc 156



>gb|BF650998.1|BF650998 NF099D09EC1F1076 Elicited cell culture Medicago truncatula cDNA
           clone NF099D09EC 5', mRNA sequence
          Length = 538

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 230 agtagtagcagcagcagcagc 210



>gb|BG448613.1|BG448613 NF044A01NR1F1001 Nodulated root Medicago truncatula cDNA clone
           NF044A01NR 5', mRNA sequence
          Length = 609

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 479 agtagtagcagcagcagcagc 459



>gb|BI307958.1|BI307958 EST529368 GPOD Medicago truncatula cDNA clone pGPOD-1O22 5' end,
           mRNA sequence
          Length = 670

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 131 agtagtagcagcagcagcagc 111



>gb|CA990000.1|CA990000 EST643508 GESD Medicago truncatula cDNA clone GESD-27A14, mRNA
           sequence
          Length = 765

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 89  agtagtagcagcagcagcagc 69



>gb|CA990915.1|CA990915 EST644423 GESD Medicago truncatula cDNA clone GESD-31E2, mRNA
           sequence
          Length = 157

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 191 agtagtagcagcagcagcagc 211
           |||||||||||||||||||||
Sbjct: 40  agtagtagcagcagcagcagc 20



>gb|AC148484.17| Medicago truncatula clone mth2-46g10, complete sequence
          Length = 130381

 Score = 42.1 bits (21), Expect = 0.076
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 191   agtagtagcagcagcagcagc 211
             |||||||||||||||||||||
Sbjct: 78817 agtagtagcagcagcagcagc 78797



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 263,830
Number of Sequences: 392609
Number of extensions: 263830
Number of successful extensions: 24343
Number of sequences better than  0.5: 7
Number of HSP's better than  0.5 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 24317
Number of HSP's gapped (non-prelim): 22
length of query: 863
length of database: 441,732,993
effective HSP length: 20
effective length of query: 843
effective length of database: 433,880,813
effective search space: 365761525359
effective search space used: 365761525359
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)