BLASTN 2.2.10 [Oct-19-2004]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= 3204680.2.1
(672 letters)
Database: Mt_nucl_with_EST.fasta
392,609 sequences; 441,732,993 total letters
Score E
Sequences producing significant alignments: (bits) Value
gb|BE999716.1|BE999716 EST431439 GVSN Medicago truncatula c... 56 4e-006
gb|CA917495.1|CA917495 EST641642 GPOD Medicago truncatula c... 56 4e-006
gb|BE203529.1|BE203529 EST396213 KV0 Medicago truncatula cD... 52 6e-005
gb|AL380077.1|AL380077 MtBB50C07F1 MtBB Medicago truncatula... 52 6e-005
gb|AL380078.1|AL380078 MtBB50C07R1 MtBB Medicago truncatula... 52 6e-005
gb|AJ497829.1|AJ497829 AJ497829 MTFLOW Medicago truncatula ... 52 6e-005
gb|AC146914.9| Medicago truncatula clone mth2-57l14, comple... 52 6e-005
gb|AC136839.19| Medicago truncatula clone mth2-13n2, comple... 52 6e-005
gb|CX522333.1|CX522333 s13dNF78C09VI068_470470 Virus-Infect... 40 0.23
>gb|BE999716.1|BE999716 EST431439 GVSN Medicago truncatula cDNA clone pGVSN-24G18, mRNA
sequence
Length = 688
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagta 71
||||| ||||||||||| || || ||||||||||||||||||||
Sbjct: 150 gaagaaggttgcaggctaggacctgttgttagtgaaggacagta 193
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Plus
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|||||||| || |||||||||||||||| || ||||| |||||||||
Sbjct: 615 aagcaagtgactcagtacatctctgatgaaccatggggctggtaccaa 662
>gb|CA917495.1|CA917495 EST641642 GPOD Medicago truncatula cDNA clone GPOD-36G20, mRNA
sequence
Length = 698
Score = 56.0 bits (28), Expect = 4e-006
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacagta 71
||||| ||||||||||| || || ||||||||||||||||||||
Sbjct: 299 gaagaaggttgcaggctaggacctgttgttagtgaaggacagta 342
>gb|BE203529.1|BE203529 EST396213 KV0 Medicago truncatula cDNA clone pKV0-10O6, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 6e-005
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
||||| ||||| ||||| || |||||| |||| | || || ||| |||| || ||||||
Sbjct: 8 agtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaagcaa 67
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|| || |||||||||||||||| || ||||| |||||||||
Sbjct: 68 gtgactcagtacatctctgatgaaccatggggctggtaccaa 109
>gb|AL380077.1|AL380077 MtBB50C07F1 MtBB Medicago truncatula cDNA clone MtBB50C07 T3, mRNA
sequence
Length = 450
Score = 52.0 bits (26), Expect = 6e-005
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
||||| ||||| ||||| || |||||| |||| | || || ||| |||| || ||||||
Sbjct: 336 agtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaagcaa 395
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|| || |||||||||||||||| || ||||| |||||||||
Sbjct: 396 gtgactcagtacatctctgatgaaccatggggctggtaccaa 437
>gb|AL380078.1|AL380078 MtBB50C07R1 MtBB Medicago truncatula cDNA clone MtBB50C07 T7, mRNA
sequence
Length = 498
Score = 52.0 bits (26), Expect = 6e-005
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
||||| ||||| ||||| || |||||| |||| | || || ||| |||| || ||||||
Sbjct: 191 agtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaagcaa 250
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|| || |||||||||||||||| || ||||| |||||||||
Sbjct: 251 gtgactcagtacatctctgatgaaccatggggctggtaccaa 292
>gb|AJ497829.1|AJ497829 AJ497829 MTFLOW Medicago truncatula cDNA clone mt--abc955114h10,
mRNA sequence
Length = 631
Score = 52.0 bits (26), Expect = 6e-005
Identities = 83/102 (81%)
Strand = Plus / Plus
Query: 439 agtggatttggacgtgagcttggagaagggggcattgataactacctgagcgtcaagcaa 498
||||| ||||| ||||| || |||||| |||| | || || ||| |||| || ||||||
Sbjct: 269 agtggttttggccgtgaactaggagaatggggattggacaattacttgagtgtgaagcaa 328
Query: 499 gtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|| || |||||||||||||||| || ||||| |||||||||
Sbjct: 329 gtgactcagtacatctctgatgaaccatggggctggtaccaa 370
>gb|AC146914.9| Medicago truncatula clone mth2-57l14, complete sequence
Length = 122769
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacag 69
||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 32496 gaagaaggttgcaggctaggacctgttgttagtgaaggacag 32455
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|||||||| || |||||||||||||||| || ||||| |||||||||
Sbjct: 30821 aagcaagtgactcagtacatctctgatgaaccatggggctggtaccaa 30774
>gb|AC136839.19| Medicago truncatula clone mth2-13n2, complete sequence
Length = 122138
Score = 52.0 bits (26), Expect = 6e-005
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 28 gaagagggttgcaggcttgggccagttgttagtgaaggacag 69
||||| ||||||||||| || || ||||||||||||||||||
Sbjct: 48538 gaagaaggttgcaggctaggacctgttgttagtgaaggacag 48497
Score = 48.1 bits (24), Expect = 0.001
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 493 aagcaagtcacggagtacatctctgatgagccgtggggatggtaccaa 540
|||||||| || |||||||||||||||| || ||||| |||||||||
Sbjct: 46863 aagcaagtgactcagtacatctctgatgaaccatggggctggtaccaa 46816
>gb|CX522333.1|CX522333 s13dNF78C09VI068_470470 Virus-Infected Leaves Medicago truncatula
cDNA, mRNA sequence
Length = 488
Score = 40.1 bits (20), Expect = 0.23
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 gttgttagtgaaggacagta 71
||||||||||||||||||||
Sbjct: 19 gttgttagtgaaggacagta 38
Database: Mt_nucl_with_EST.fasta
Posted date: Feb 7, 2006 2:25 PM
Number of letters in database: 441,732,993
Number of sequences in database: 392,609
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 146,190
Number of Sequences: 392609
Number of extensions: 146190
Number of successful extensions: 9122
Number of sequences better than 0.5: 9
Number of HSP's better than 0.5 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9106
Number of HSP's gapped (non-prelim): 16
length of query: 672
length of database: 441,732,993
effective HSP length: 19
effective length of query: 653
effective length of database: 434,273,422
effective search space: 283580544566
effective search space used: 283580544566
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)