BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204486.2.1
         (607 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|DW017721.1|DW017721  EST1226682 MTY Medicago truncatula c...    52   6e-005

>gb|DW017721.1|DW017721 EST1226682 MTY Medicago truncatula cDNA clone MTYAX21, mRNA
           sequence
          Length = 855

 Score = 52.0 bits (26), Expect = 6e-005
 Identities = 35/38 (92%)
 Strand = Plus / Plus

                                                 
Query: 105 ttcaccttcgtggggcagctggagttcttctacgacca 142
           ||||| |||||||||||||| ||||||||||| |||||
Sbjct: 634 ttcacattcgtggggcagcttgagttcttctatgacca 671



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 87,768
Number of Sequences: 392609
Number of extensions: 87768
Number of successful extensions: 5497
Number of sequences better than  0.5: 1
Number of HSP's better than  0.5 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5496
Number of HSP's gapped (non-prelim): 1
length of query: 607
length of database: 441,732,993
effective HSP length: 19
effective length of query: 588
effective length of database: 434,273,422
effective search space: 255352772136
effective search space used: 255352772136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)