BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3204317.2.1
         (607 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|CG952158.1|CG952158  MBEGR78TR mth2 Medicago truncatula g...    48   9e-004
gb|CA921600.1|CA921600  EST639318 MTUS Medicago truncatula c...    48   9e-004
gb|AL371651.1|AL371651  MtBA45E09F1 MtBA Medicago truncatula...    42   0.053
gb|AW773684.1|AW773684  EST332670 KV3 Medicago truncatula cD...    40   0.21 

>gb|CG952158.1|CG952158 MBEGR78TR mth2 Medicago truncatula genomic clone 52M12, DNA
           sequence
          Length = 871

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
           ||||||||||||||||||||| ||||| || |||||
Sbjct: 206 ccactcgaagttgtcgagcaaggaccatgcaaagta 241



>gb|CA921600.1|CA921600 EST639318 MTUS Medicago truncatula cDNA clone MTUS-42C6, mRNA
           sequence
          Length = 730

 Score = 48.1 bits (24), Expect = 9e-004
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 292 ccactcgaagttgtcgagcaacgaccaggcgaagta 327
           ||||||||||||||||||||| ||||| || |||||
Sbjct: 480 ccactcgaagttgtcgagcaaggaccatgcaaagta 515



>gb|AL371651.1|AL371651 MtBA45E09F1 MtBA Medicago truncatula cDNA clone MtBA45E09 T3, mRNA
           sequence
          Length = 478

 Score = 42.1 bits (21), Expect = 0.053
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 292 ccactcgaagttgtcgagcaa 312
           |||||||||||||||||||||
Sbjct: 456 ccactcgaagttgtcgagcaa 476



>gb|AW773684.1|AW773684 EST332670 KV3 Medicago truncatula cDNA clone pKV3-15F3, mRNA
           sequence
          Length = 615

 Score = 40.1 bits (20), Expect = 0.21
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 292 ccactcgaagttgtcgagca 311
           ||||||||||||||||||||
Sbjct: 435 ccactcgaagttgtcgagca 454



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 58,798
Number of Sequences: 392609
Number of extensions: 58798
Number of successful extensions: 4215
Number of sequences better than  0.5: 4
Number of HSP's better than  0.5 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 4211
Number of HSP's gapped (non-prelim): 4
length of query: 607
length of database: 441,732,993
effective HSP length: 19
effective length of query: 588
effective length of database: 434,273,422
effective search space: 255352772136
effective search space used: 255352772136
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)