BLASTN 2.2.10 [Oct-19-2004]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= 3202900.2.1
         (938 letters)

Database: Mt_nucl_with_EST.fasta 
           392,609 sequences; 441,732,993 total letters



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AC157777.2|  Medicago truncatula chromosome 7 BAC clone m...    42   0.083
gb|AC144405.28|  Medicago truncatula clone mth2-16m18, WORKI...    42   0.083
gb|AC148396.3|  Medicago truncatula chromosome 2 BAC clone m...    40   0.33 

>gb|AC157777.2| Medicago truncatula chromosome 7 BAC clone mth2-25c14, complete
             sequence
          Length = 106857

 Score = 42.1 bits (21), Expect = 0.083
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 522   ctctttttcatcctcactctcacca 546
             ||||||||||||||| |||||||||
Sbjct: 40573 ctctttttcatcctctctctcacca 40597



>gb|AC144405.28| Medicago truncatula clone mth2-16m18, WORKING DRAFT SEQUENCE, 7
             unordered pieces
          Length = 109873

 Score = 42.1 bits (21), Expect = 0.083
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 221   tgcttgtcacttgtcagtatc 241
             |||||||||||||||||||||
Sbjct: 45385 tgcttgtcacttgtcagtatc 45405



>gb|AC148396.3| Medicago truncatula chromosome 2 BAC clone mth2-17k4, complete sequence
          Length = 108273

 Score = 40.1 bits (20), Expect = 0.33
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 227   tcacttgtcagtatcagttc 246
             ||||||||||||||||||||
Sbjct: 50694 tcacttgtcagtatcagttc 50713



  Database: Mt_nucl_with_EST.fasta
    Posted date:  Feb 7, 2006  2:25 PM
  Number of letters in database: 441,732,993
  Number of sequences in database:  392,609
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 266,067
Number of Sequences: 392609
Number of extensions: 266067
Number of successful extensions: 22158
Number of sequences better than  0.5: 3
Number of HSP's better than  0.5 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 22142
Number of HSP's gapped (non-prelim): 16
length of query: 938
length of database: 441,732,993
effective HSP length: 20
effective length of query: 918
effective length of database: 433,880,813
effective search space: 398302586334
effective search space used: 398302586334
T: 0
A: 0
X1: 11 (21.8 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)